Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO39_RS13785 | Genome accession | NZ_CP123158 |
| Coordinates | 2781770..2782240 (+) | Length | 156 a.a. |
| NCBI ID | WP_047437043.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BE-MSSA9 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2770224..2787572 | 2781770..2782240 | within | 0 |
Gene organization within MGE regions
Location: 2770224..2787572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO39_RS13690 (QAO39_13680) | - | 2770224..2771261 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAO39_RS13695 (QAO39_13685) | - | 2771321..2772412 (-) | 1092 | WP_230582822.1 | Abi family protein | - |
| QAO39_RS13700 (QAO39_13690) | - | 2772692..2772859 (-) | 168 | WP_047437071.1 | hypothetical protein | - |
| QAO39_RS13705 (QAO39_13695) | - | 2773054..2773668 (-) | 615 | WP_047437068.1 | hypothetical protein | - |
| QAO39_RS13710 (QAO39_13700) | - | 2773686..2774399 (-) | 714 | WP_031768797.1 | XRE family transcriptional regulator | - |
| QAO39_RS13715 (QAO39_13705) | - | 2774362..2774537 (+) | 176 | Protein_2660 | transcriptional regulator | - |
| QAO39_RS13720 (QAO39_13710) | - | 2774534..2774803 (+) | 270 | WP_047432554.1 | helix-turn-helix transcriptional regulator | - |
| QAO39_RS13725 (QAO39_13715) | - | 2774820..2775569 (+) | 750 | WP_047437065.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO39_RS13730 (QAO39_13720) | - | 2775873..2776088 (-) | 216 | WP_015977918.1 | hypothetical protein | - |
| QAO39_RS13735 (QAO39_13725) | - | 2776152..2776346 (+) | 195 | WP_047437059.1 | hypothetical protein | - |
| QAO39_RS13740 (QAO39_13730) | - | 2776351..2776725 (-) | 375 | WP_047437056.1 | hypothetical protein | - |
| QAO39_RS13745 (QAO39_13735) | - | 2776785..2777105 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QAO39_RS13750 (QAO39_13740) | - | 2777102..2777263 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| QAO39_RS13755 (QAO39_13745) | - | 2777358..2777660 (+) | 303 | WP_047437053.1 | DUF2482 family protein | - |
| QAO39_RS13760 (QAO39_13750) | - | 2777665..2777925 (+) | 261 | WP_047437050.1 | DUF1108 family protein | - |
| QAO39_RS13765 (QAO39_13755) | - | 2777934..2778197 (+) | 264 | WP_072292182.1 | hypothetical protein | - |
| QAO39_RS13770 (QAO39_13760) | - | 2778206..2780149 (+) | 1944 | WP_411896651.1 | AAA family ATPase | - |
| QAO39_RS13775 (QAO39_13765) | - | 2780151..2781071 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAO39_RS13780 (QAO39_13770) | - | 2781152..2781769 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| QAO39_RS13785 (QAO39_13775) | ssbA | 2781770..2782240 (+) | 471 | WP_047437043.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO39_RS13790 (QAO39_13780) | - | 2782270..2783163 (+) | 894 | WP_047437040.1 | DnaD domain protein | - |
| QAO39_RS13795 (QAO39_13785) | - | 2783170..2783388 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| QAO39_RS13800 (QAO39_13790) | - | 2783397..2783801 (+) | 405 | WP_047437035.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO39_RS13805 (QAO39_13795) | - | 2783814..2784185 (+) | 372 | WP_047437032.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO39_RS13810 (QAO39_13800) | - | 2784186..2784434 (+) | 249 | WP_047437029.1 | SAV1978 family virulence-associated passenger protein | - |
| QAO39_RS13815 (QAO39_13805) | - | 2784446..2784613 (+) | 168 | WP_162889422.1 | hypothetical protein | - |
| QAO39_RS13820 (QAO39_13810) | - | 2784606..2784854 (+) | 249 | WP_047437026.1 | DUF1024 family protein | - |
| QAO39_RS13825 (QAO39_13815) | - | 2784847..2785383 (+) | 537 | Protein_2682 | dUTP diphosphatase | - |
| QAO39_RS13830 (QAO39_13820) | - | 2785420..2785665 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| QAO39_RS13835 (QAO39_13825) | - | 2785662..2785868 (+) | 207 | WP_047437023.1 | DUF1381 domain-containing protein | - |
| QAO39_RS13840 (QAO39_13830) | - | 2785865..2786251 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| QAO39_RS13845 (QAO39_13835) | rinB | 2786248..2786397 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAO39_RS13850 (QAO39_13840) | - | 2786397..2786597 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAO39_RS13855 (QAO39_13845) | - | 2786625..2787041 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO39_RS13860 (QAO39_13850) | - | 2787273..2787572 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17693.65 Da Isoelectric Point: 8.3520
>NTDB_id=819724 QAO39_RS13785 WP_047437043.1 2781770..2782240(+) (ssbA) [Staphylococcus aureus strain BE-MSSA9]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVAHSIQFLEPKNTNDNQQDLYQKQAQQSRGQSQYPYNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVAHSIQFLEPKNTNDNQQDLYQKQAQQSRGQSQYPYNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819724 QAO39_RS13785 WP_047437043.1 2781770..2782240(+) (ssbA) [Staphylococcus aureus strain BE-MSSA9]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCGCAAGGAGAACGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCATTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCCATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAAAAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCGCAAGGAGAACGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCATTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCCATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACCAAAAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
67.949 |
0.397 |
| ssb | Neisseria meningitidis MC58 |
34.104 |
100 |
0.378 |
| ssb | Neisseria gonorrhoeae MS11 |
34.104 |
100 |
0.378 |
| ssb | Vibrio cholerae strain A1552 |
31.844 |
100 |
0.365 |