Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY58_RS13830 | Genome accession | NZ_CP123144 |
| Coordinates | 2786723..2787193 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain GE-MRSA20 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2763135..2792525 | 2786723..2787193 | within | 0 |
Gene organization within MGE regions
Location: 2763135..2792525
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY58_RS13675 (QAY58_13700) | - | 2763135..2763761 (-) | 627 | WP_000522381.1 | nitroreductase family protein | - |
| QAY58_RS13680 (QAY58_13705) | - | 2763958..2765217 (+) | 1260 | WP_000120297.1 | SdrH family protein | - |
| QAY58_RS13685 (QAY58_13710) | mroQ | 2765242..2765985 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAY58_RS13690 (QAY58_13715) | groES | 2766160..2766444 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY58_RS13695 (QAY58_13720) | groL | 2766520..2768136 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| QAY58_RS13700 (QAY58_13725) | - | 2768676..2769983 (-) | 1308 | WP_103145918.1 | TrkH family potassium uptake protein | - |
| QAY58_RS13705 (QAY58_13730) | - | 2770427..2771650 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| QAY58_RS13710 (QAY58_13735) | lukH | 2772086..2773141 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| QAY58_RS13715 (QAY58_13740) | lukG | 2773163..2774179 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| QAY58_RS13720 (QAY58_13745) | sph | 2774417..2775241 (-) | 825 | Protein_2661 | sphingomyelin phosphodiesterase | - |
| QAY58_RS13725 (QAY58_13750) | - | 2775298..2776335 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| QAY58_RS13730 (QAY58_13755) | - | 2776394..2776858 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| QAY58_RS13735 (QAY58_13760) | - | 2776958..2777140 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| QAY58_RS13740 (QAY58_13765) | - | 2777344..2777685 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| QAY58_RS13745 (QAY58_13770) | - | 2777691..2778623 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| QAY58_RS13750 (QAY58_13775) | - | 2778639..2779352 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| QAY58_RS13755 (QAY58_13780) | - | 2779315..2779488 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| QAY58_RS13760 (QAY58_13785) | - | 2779485..2779748 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| QAY58_RS13765 (QAY58_13790) | - | 2779764..2779979 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| QAY58_RS13770 (QAY58_13795) | - | 2779968..2780297 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| QAY58_RS13775 (QAY58_13800) | - | 2780348..2781100 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY58_RS13780 (QAY58_13805) | - | 2781116..2781313 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| QAY58_RS13785 (QAY58_13810) | - | 2781300..2781680 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| QAY58_RS13790 (QAY58_13815) | - | 2781735..2782058 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| QAY58_RS13795 (QAY58_13820) | - | 2782055..2782216 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| QAY58_RS13800 (QAY58_13825) | - | 2782311..2782613 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| QAY58_RS13805 (QAY58_13830) | - | 2782618..2782878 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| QAY58_RS13810 (QAY58_13835) | - | 2782887..2783150 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAY58_RS13815 (QAY58_13840) | - | 2783159..2785102 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| QAY58_RS13820 (QAY58_13845) | - | 2785104..2786024 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAY58_RS13825 (QAY58_13850) | - | 2786105..2786722 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| QAY58_RS13830 (QAY58_13855) | ssbA | 2786723..2787193 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY58_RS13835 (QAY58_13860) | - | 2787223..2788116 (+) | 894 | WP_103145874.1 | DnaD domain protein | - |
| QAY58_RS13840 (QAY58_13865) | - | 2788123..2788341 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| QAY58_RS13845 (QAY58_13870) | - | 2788350..2788754 (+) | 405 | WP_000401967.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAY58_RS13850 (QAY58_13875) | - | 2788767..2789135 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAY58_RS13855 (QAY58_13880) | - | 2789139..2789381 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| QAY58_RS13860 (QAY58_13885) | - | 2789396..2789650 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| QAY58_RS13865 (QAY58_13890) | - | 2789637..2789807 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| QAY58_RS13870 (QAY58_13895) | - | 2789800..2790336 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| QAY58_RS13875 (QAY58_13900) | - | 2790373..2790618 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| QAY58_RS13880 (QAY58_13905) | - | 2790615..2790821 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| QAY58_RS13885 (QAY58_13910) | - | 2790818..2791204 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| QAY58_RS13890 (QAY58_13915) | rinB | 2791201..2791350 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAY58_RS13895 (QAY58_13920) | - | 2791350..2791550 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAY58_RS13900 (QAY58_13925) | - | 2791578..2791994 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAY58_RS13905 (QAY58_13930) | - | 2792226..2792525 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=819511 QAY58_RS13830 WP_000934760.1 2786723..2787193(+) (ssbA) [Staphylococcus aureus strain GE-MRSA20]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=819511 QAY58_RS13830 WP_000934760.1 2786723..2787193(+) (ssbA) [Staphylococcus aureus strain GE-MRSA20]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |