Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO52_RS13570 | Genome accession | NZ_CP123108 |
| Coordinates | 2744375..2744845 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain IT-MSSA49 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2715842..2750756 | 2744375..2744845 | within | 0 |
Gene organization within MGE regions
Location: 2715842..2750756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO52_RS13380 (QAO52_13385) | - | 2715842..2716468 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| QAO52_RS13385 (QAO52_13390) | - | 2716665..2717846 (+) | 1182 | WP_031786193.1 | SdrH family protein | - |
| QAO52_RS13390 (QAO52_13395) | mroQ | 2717871..2718614 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAO52_RS13395 (QAO52_13400) | groES | 2718789..2719073 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAO52_RS13400 (QAO52_13405) | groL | 2719149..2720765 (+) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| QAO52_RS13405 (QAO52_13410) | - | 2720860..2721406 (-) | 547 | Protein_2601 | site-specific integrase | - |
| QAO52_RS13410 (QAO52_13415) | - | 2721467..2721679 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| QAO52_RS13415 (QAO52_13420) | - | 2721676..2722266 (+) | 591 | WP_001293058.1 | terminase small subunit | - |
| QAO52_RS13420 (QAO52_13425) | - | 2722584..2723020 (+) | 437 | Protein_2604 | hypothetical protein | - |
| QAO52_RS13425 (QAO52_13430) | - | 2723126..2723569 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| QAO52_RS13430 (QAO52_13435) | - | 2724422..2725729 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| QAO52_RS13435 (QAO52_13440) | - | 2725890..2726801 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAO52_RS13440 (QAO52_13445) | - | 2726863..2727708 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAO52_RS13445 (QAO52_13450) | - | 2728080..2729303 (-) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| QAO52_RS13450 (QAO52_13455) | lukH | 2729738..2730793 (+) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| QAO52_RS13455 (QAO52_13460) | lukG | 2730815..2731831 (+) | 1017 | WP_031924242.1 | bi-component leukocidin LukGH subunit G | - |
| QAO52_RS13460 (QAO52_13465) | sph | 2732069..2732893 (-) | 825 | Protein_2612 | sphingomyelin phosphodiesterase | - |
| QAO52_RS13465 (QAO52_13470) | - | 2732950..2733987 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| QAO52_RS13470 (QAO52_13475) | - | 2734046..2734510 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| QAO52_RS13475 (QAO52_13480) | - | 2734610..2734792 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| QAO52_RS13480 (QAO52_13485) | - | 2734996..2735337 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| QAO52_RS13485 (QAO52_13490) | - | 2735343..2736275 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| QAO52_RS13490 (QAO52_13495) | - | 2736291..2737004 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| QAO52_RS13495 (QAO52_13500) | - | 2736967..2737140 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| QAO52_RS13500 (QAO52_13505) | - | 2737137..2737400 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| QAO52_RS13505 (QAO52_13510) | - | 2737416..2737631 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| QAO52_RS13510 (QAO52_13515) | - | 2737620..2737949 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| QAO52_RS13515 (QAO52_13520) | - | 2738000..2738752 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO52_RS13520 (QAO52_13525) | - | 2738768..2738965 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| QAO52_RS13525 (QAO52_13530) | - | 2738952..2739332 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| QAO52_RS13530 (QAO52_13535) | - | 2739387..2739710 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| QAO52_RS13535 (QAO52_13540) | - | 2739707..2739868 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| QAO52_RS13540 (QAO52_13545) | - | 2739963..2740265 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| QAO52_RS13545 (QAO52_13550) | - | 2740270..2740530 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| QAO52_RS13550 (QAO52_13555) | - | 2740539..2740802 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO52_RS13555 (QAO52_13560) | - | 2740811..2742754 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| QAO52_RS13560 (QAO52_13565) | - | 2742756..2743676 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAO52_RS13565 (QAO52_13570) | - | 2743757..2744374 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| QAO52_RS13570 (QAO52_13575) | ssbA | 2744375..2744845 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO52_RS13575 (QAO52_13580) | - | 2744875..2745768 (+) | 894 | WP_000148321.1 | DnaD domain protein | - |
| QAO52_RS13580 (QAO52_13585) | - | 2745775..2745993 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| QAO52_RS13585 (QAO52_13590) | - | 2746002..2746406 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO52_RS13590 (QAO52_13595) | - | 2746419..2746787 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO52_RS13595 (QAO52_13600) | - | 2746791..2747033 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| QAO52_RS13600 (QAO52_13605) | - | 2747048..2747296 (+) | 249 | WP_001065094.1 | DUF1024 family protein | - |
| QAO52_RS13605 (QAO52_13610) | - | 2747289..2747825 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| QAO52_RS13610 (QAO52_13615) | - | 2747862..2748107 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| QAO52_RS13615 (QAO52_13620) | - | 2748104..2748310 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| QAO52_RS13620 (QAO52_13625) | - | 2748307..2748693 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| QAO52_RS13625 (QAO52_13630) | rinB | 2748690..2748839 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QAO52_RS13630 (QAO52_13635) | - | 2748839..2749039 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QAO52_RS13635 (QAO52_13640) | - | 2749067..2749483 (+) | 417 | WP_031864707.1 | RinA family phage transcriptional regulator | - |
| QAO52_RS13640 (QAO52_13645) | tnpA | 2749749..2750234 (+) | 486 | WP_000093392.1 | IS200/IS605 family transposase | - |
| QAO52_RS13645 (QAO52_13650) | - | 2750457..2750756 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=818877 QAO52_RS13570 WP_000934760.1 2744375..2744845(+) (ssbA) [Staphylococcus aureus strain IT-MSSA49]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818877 QAO52_RS13570 WP_000934760.1 2744375..2744845(+) (ssbA) [Staphylococcus aureus strain IT-MSSA49]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |