Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO28_RS13780 | Genome accession | NZ_CP123104 |
| Coordinates | 2784401..2784871 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain IT-MSSA53 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2767167..2791451 | 2784401..2784871 | within | 0 |
Gene organization within MGE regions
Location: 2767167..2791451
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO28_RS13660 (QAO28_13650) | - | 2767167..2768011 (+) | 845 | Protein_2648 | class I SAM-dependent methyltransferase | - |
| QAO28_RS13665 (QAO28_13655) | - | 2768384..2769607 (-) | 1224 | WP_000206635.1 | ArgE/DapE family deacylase | - |
| QAO28_RS13670 (QAO28_13660) | lukH | 2770043..2771095 (+) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| QAO28_RS13675 (QAO28_13665) | lukG | 2771117..2772133 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| QAO28_RS13680 (QAO28_13670) | sph | 2772634..2773458 (-) | 825 | Protein_2652 | sphingomyelin phosphodiesterase | - |
| QAO28_RS13685 (QAO28_13675) | - | 2773515..2774552 (-) | 1038 | WP_000857176.1 | tyrosine-type recombinase/integrase | - |
| QAO28_RS13690 (QAO28_13680) | - | 2774660..2775274 (+) | 615 | WP_000191459.1 | hypothetical protein | - |
| QAO28_RS13695 (QAO28_13685) | - | 2775271..2775417 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| QAO28_RS13700 (QAO28_13690) | - | 2775453..2775635 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| QAO28_RS13705 (QAO28_13695) | - | 2775835..2776605 (-) | 771 | WP_031783378.1 | S24 family peptidase | - |
| QAO28_RS13710 (QAO28_13700) | - | 2776764..2776988 (+) | 225 | WP_000338185.1 | DUF739 family protein | - |
| QAO28_RS13715 (QAO28_13705) | - | 2777006..2777266 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| QAO28_RS13720 (QAO28_13710) | - | 2777290..2777829 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| QAO28_RS13725 (QAO28_13715) | - | 2777886..2778635 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO28_RS13730 (QAO28_13720) | - | 2778651..2778848 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| QAO28_RS13735 (QAO28_13725) | - | 2778879..2779019 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| QAO28_RS13740 (QAO28_13730) | - | 2779034..2779666 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| QAO28_RS13745 (QAO28_13735) | - | 2779725..2780045 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QAO28_RS13750 (QAO28_13740) | - | 2780042..2780203 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| QAO28_RS13755 (QAO28_13745) | - | 2780296..2780556 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAO28_RS13760 (QAO28_13750) | - | 2780565..2780828 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO28_RS13765 (QAO28_13755) | - | 2780837..2782780 (+) | 1944 | WP_031783377.1 | AAA family ATPase | - |
| QAO28_RS13770 (QAO28_13760) | - | 2782782..2783702 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAO28_RS13775 (QAO28_13765) | - | 2783783..2784400 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| QAO28_RS13780 (QAO28_13770) | ssbA | 2784401..2784871 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO28_RS13785 (QAO28_13775) | - | 2784901..2785794 (+) | 894 | WP_000148335.1 | DnaD domain protein | - |
| QAO28_RS13790 (QAO28_13780) | - | 2785801..2786019 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| QAO28_RS13795 (QAO28_13785) | - | 2786028..2786432 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO28_RS13800 (QAO28_13790) | - | 2786445..2786815 (+) | 371 | Protein_2676 | SA1788 family PVL leukocidin-associated protein | - |
| QAO28_RS13805 (QAO28_13795) | - | 2786819..2787061 (+) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| QAO28_RS13810 (QAO28_13800) | - | 2787076..2787327 (+) | 252 | WP_025174939.1 | DUF1024 family protein | - |
| QAO28_RS13815 (QAO28_13805) | - | 2787317..2787490 (+) | 174 | WP_000028424.1 | hypothetical protein | - |
| QAO28_RS13820 (QAO28_13810) | - | 2787491..2787772 (+) | 282 | WP_000454994.1 | hypothetical protein | - |
| QAO28_RS13825 (QAO28_13815) | - | 2787773..2787934 (+) | 162 | WP_000889683.1 | hypothetical protein | - |
| QAO28_RS13830 (QAO28_13820) | - | 2787949..2788482 (+) | 534 | WP_025920701.1 | dUTP diphosphatase | - |
| QAO28_RS13835 (QAO28_13825) | - | 2788519..2788725 (+) | 207 | WP_000195826.1 | DUF1381 domain-containing protein | - |
| QAO28_RS13840 (QAO28_13830) | - | 2788722..2788913 (+) | 192 | Protein_2684 | hypothetical protein | - |
| QAO28_RS13845 (QAO28_13835) | - | 2788914..2789117 (+) | 204 | WP_001072793.1 | hypothetical protein | - |
| QAO28_RS13850 (QAO28_13840) | rinB | 2789110..2789235 (+) | 126 | WP_031783376.1 | transcriptional activator RinB | - |
| QAO28_RS13855 (QAO28_13845) | - | 2789235..2789435 (+) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| QAO28_RS13860 (QAO28_13850) | - | 2789458..2789928 (+) | 471 | WP_000282755.1 | hypothetical protein | - |
| QAO28_RS13865 (QAO28_13855) | - | 2790043..2790495 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| QAO28_RS13870 (QAO28_13860) | - | 2790511..2790855 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| QAO28_RS13875 (QAO28_13865) | - | 2790984..2791451 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=818793 QAO28_RS13780 WP_000934760.1 2784401..2784871(+) (ssbA) [Staphylococcus aureus strain IT-MSSA53]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=818793 QAO28_RS13780 WP_000934760.1 2784401..2784871(+) (ssbA) [Staphylococcus aureus strain IT-MSSA53]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |