Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO25_RS14120 | Genome accession | NZ_CP123095 |
| Coordinates | 2847754..2848173 (+) | Length | 139 a.a. |
| NCBI ID | WP_000934777.1 | Uniprot ID | A0AAP7JVY6 |
| Organism | Staphylococcus aureus strain MRSA-COL | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2838888..2858340 | 2847754..2848173 | within | 0 |
Gene organization within MGE regions
Location: 2838888..2858340
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO25_RS14020 (QAO25_14025) | - | 2838888..2840093 (-) | 1206 | WP_000264187.1 | tyrosine-type recombinase/integrase | - |
| QAO25_RS14025 (QAO25_14030) | - | 2840287..2841000 (-) | 714 | WP_001582614.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAO25_RS14030 (QAO25_14035) | - | 2841078..2841260 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| QAO25_RS14035 (QAO25_14040) | - | 2841460..2842179 (-) | 720 | WP_000358220.1 | XRE family transcriptional regulator | - |
| QAO25_RS14040 (QAO25_14045) | - | 2842321..2842539 (+) | 219 | WP_001198674.1 | helix-turn-helix transcriptional regulator | - |
| QAO25_RS14045 (QAO25_14050) | - | 2842554..2842862 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| QAO25_RS14050 (QAO25_14055) | - | 2843019..2843810 (+) | 792 | WP_001148570.1 | phage antirepressor | - |
| QAO25_RS14055 (QAO25_14060) | tscA | 2843811..2844035 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| QAO25_RS14060 (QAO25_14065) | - | 2844075..2844320 (+) | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| QAO25_RS14065 (QAO25_14070) | - | 2844289..2844654 (-) | 366 | WP_001128433.1 | hypothetical protein | - |
| QAO25_RS14070 (QAO25_14075) | - | 2844711..2844908 (+) | 198 | WP_031903992.1 | hypothetical protein | - |
| QAO25_RS14075 (QAO25_14080) | - | 2844895..2845275 (-) | 381 | WP_000773060.1 | DUF2513 domain-containing protein | - |
| QAO25_RS14080 (QAO25_14085) | - | 2845323..2845514 (+) | 192 | WP_000389907.1 | hypothetical protein | - |
| QAO25_RS14085 (QAO25_14090) | - | 2845492..2845743 (-) | 252 | WP_000801109.1 | hypothetical protein | - |
| QAO25_RS14090 (QAO25_14095) | - | 2845798..2846061 (+) | 264 | WP_001124196.1 | helix-turn-helix domain-containing protein | - |
| QAO25_RS14095 (QAO25_14100) | - | 2846074..2846235 (+) | 162 | WP_001285962.1 | DUF1270 domain-containing protein | - |
| QAO25_RS14100 (QAO25_14105) | - | 2846325..2846642 (+) | 318 | WP_001097093.1 | hypothetical protein | - |
| QAO25_RS14105 (QAO25_14110) | - | 2846647..2846907 (+) | 261 | WP_001556704.1 | DUF1108 family protein | - |
| QAO25_RS14110 (QAO25_14115) | - | 2846917..2847138 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| QAO25_RS14115 (QAO25_14120) | - | 2847131..2847754 (+) | 624 | WP_000139722.1 | DUF1071 domain-containing protein | - |
| QAO25_RS14120 (QAO25_14125) | ssbA | 2847754..2848173 (+) | 420 | WP_000934777.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO25_RS14125 (QAO25_14130) | - | 2848187..2848882 (+) | 696 | WP_001124444.1 | putative HNHc nuclease | - |
| QAO25_RS14130 (QAO25_14135) | - | 2848854..2849654 (+) | 801 | WP_000504976.1 | phage replisome organizer N-terminal domain-containing protein | - |
| QAO25_RS14135 (QAO25_14140) | - | 2849654..2850010 (+) | 357 | WP_001132238.1 | hypothetical protein | - |
| QAO25_RS14140 (QAO25_14145) | - | 2850007..2851248 (+) | 1242 | WP_001106168.1 | DnaB helicase C-terminal domain-containing protein | - |
| QAO25_RS14145 (QAO25_14150) | - | 2851245..2851460 (+) | 216 | WP_001095146.1 | hypothetical protein | - |
| QAO25_RS14150 (QAO25_14155) | - | 2851463..2851684 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| QAO25_RS14155 (QAO25_14160) | - | 2851694..2852119 (+) | 426 | WP_000451862.1 | DNA N-6-adenine-methyltransferase | - |
| QAO25_RS14160 (QAO25_14165) | - | 2852116..2852520 (+) | 405 | WP_000049810.1 | DUF1064 domain-containing protein | - |
| QAO25_RS14165 (QAO25_14170) | - | 2852525..2852710 (+) | 186 | WP_001187232.1 | DUF3113 family protein | - |
| QAO25_RS14170 (QAO25_14175) | - | 2852711..2852979 (+) | 269 | Protein_2739 | helix-turn-helix domain-containing protein | - |
| QAO25_RS14175 (QAO25_14180) | - | 2852980..2853336 (+) | 357 | WP_000029384.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO25_RS14180 (QAO25_14185) | - | 2853340..2853582 (+) | 243 | WP_000132205.1 | SAV1978 family virulence-associated passenger protein | - |
| QAO25_RS14185 (QAO25_14190) | - | 2853596..2853802 (+) | 207 | WP_000693987.1 | hypothetical protein | - |
| QAO25_RS14190 (QAO25_14195) | - | 2853805..2854206 (+) | 402 | WP_000695759.1 | hypothetical protein | - |
| QAO25_RS14195 (QAO25_14200) | - | 2854203..2854550 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| QAO25_RS14200 (QAO25_14205) | - | 2854547..2854855 (+) | 309 | WP_000144708.1 | hypothetical protein | - |
| QAO25_RS14205 (QAO25_14210) | - | 2854848..2855084 (+) | 237 | WP_001065023.1 | DUF1024 family protein | - |
| QAO25_RS14210 (QAO25_14215) | - | 2855089..2855631 (+) | 543 | WP_000185654.1 | dUTP diphosphatase | - |
| QAO25_RS14215 (QAO25_14220) | - | 2855668..2855874 (+) | 207 | WP_000195770.1 | DUF1381 domain-containing protein | - |
| QAO25_RS14220 (QAO25_14225) | - | 2855871..2856065 (+) | 195 | WP_000141183.1 | hypothetical protein | - |
| QAO25_RS14225 (QAO25_14230) | - | 2856062..2856265 (+) | 204 | WP_001072795.1 | hypothetical protein | - |
| QAO25_RS14230 (QAO25_14235) | rinB | 2856258..2856410 (+) | 153 | WP_000166078.1 | transcriptional activator RinB | - |
| QAO25_RS14235 (QAO25_14240) | - | 2856478..2856678 (+) | 201 | WP_000265258.1 | DUF1514 family protein | - |
| QAO25_RS14240 (QAO25_14245) | - | 2856662..2856985 (+) | 324 | Protein_2753 | ATP-dependent helicase | - |
| QAO25_RS14245 (QAO25_14250) | - | 2856998..2857435 (+) | 438 | WP_000513702.1 | transcriptional regulator | - |
| QAO25_RS14250 (QAO25_14255) | - | 2857592..2857906 (+) | 315 | WP_000160689.1 | HNH endonuclease | - |
| QAO25_RS14255 (QAO25_14260) | - | 2858035..2858340 (+) | 306 | WP_000778932.1 | P27 family phage terminase small subunit | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15608.21 Da Isoelectric Point: 7.0171
>NTDB_id=818624 QAO25_RS14120 WP_000934777.1 2847754..2848173(+) (ssbA) [Staphylococcus aureus strain MRSA-COL]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=818624 QAO25_RS14120 WP_000934777.1 2847754..2848173(+) (ssbA) [Staphylococcus aureus strain MRSA-COL]
ATGTTAAACAGAACAGTATTAGTAGGGCGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACAAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTAT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGGCGATTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGGCGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACAAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTAT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGGCGATTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
79.439 |
76.978 |
0.612 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.289 |
100 |
0.583 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.182 |
79.137 |
0.46 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.568 |
100 |
0.396 |
| ssbA | Streptococcus mutans UA159 |
44.538 |
85.612 |
0.381 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.113 |
76.259 |
0.367 |