Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QCM05_RS03045 | Genome accession | NZ_CP122515 |
| Coordinates | 627670..628245 (+) | Length | 191 a.a. |
| NCBI ID | WP_140446240.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HP22 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 622670..633245
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCM05_RS03020 (QCM05_03020) | uvrD | 623361..625406 (+) | 2046 | WP_279963409.1 | DNA helicase UvrD | - |
| QCM05_RS03025 (QCM05_03025) | flgA | 625403..626059 (+) | 657 | WP_121278738.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QCM05_RS03030 (QCM05_03030) | - | 626069..626632 (+) | 564 | WP_279963410.1 | UbiX family flavin prenyltransferase | - |
| QCM05_RS03035 (QCM05_03035) | coaD | 626632..627105 (+) | 474 | WP_121278733.1 | pantetheine-phosphate adenylyltransferase | - |
| QCM05_RS03040 (QCM05_03040) | tmk | 627107..627682 (+) | 576 | WP_140446239.1 | dTMP kinase | - |
| QCM05_RS03045 (QCM05_03045) | comFC | 627670..628245 (+) | 576 | WP_140446240.1 | ComF family protein | Machinery gene |
| QCM05_RS03050 (QCM05_03050) | - | 628278..628664 (+) | 387 | Protein_599 | VRR-NUC domain-containing protein | - |
| QCM05_RS03055 (QCM05_03055) | - | 628651..629412 (-) | 762 | WP_001183567.1 | Eco47II family restriction endonuclease | - |
| QCM05_RS03060 (QCM05_03060) | dcm | 629381..630412 (-) | 1032 | WP_127984433.1 | DNA (cytosine-5-)-methyltransferase | - |
| QCM05_RS03065 (QCM05_03065) | - | 630420..630977 (+) | 558 | WP_279963411.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21396.94 Da Isoelectric Point: 8.6728
>NTDB_id=816241 QCM05_RS03045 WP_140446240.1 627670..628245(+) (comFC) [Helicobacter pylori strain HP22]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=816241 QCM05_RS03045 WP_140446240.1 627670..628245(+) (comFC) [Helicobacter pylori strain HP22]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAGGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAGGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.788 |
100 |
0.372 |