Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QBS18_RS16620 Genome accession   NZ_CP121856
Coordinates   3561774..3562094 (+) Length   106 a.a.
NCBI ID   WP_279499090.1    Uniprot ID   -
Organism   Aeromonas veronii strain LOID 16013     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3556774..3567094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS18_RS16605 yfbV 3557211..3557651 (-) 441 WP_279507375.1 terminus macrodomain insulation protein YfbV -
  QBS18_RS16610 - 3557956..3559158 (+) 1203 WP_005349210.1 acetate kinase -
  QBS18_RS16615 pta 3559213..3561393 (+) 2181 WP_279499091.1 phosphate acetyltransferase -
  QBS18_RS16620 comEA/comE1 3561774..3562094 (+) 321 WP_279499090.1 ComEA family DNA-binding protein Machinery gene
  QBS18_RS16625 galU 3562191..3563102 (+) 912 WP_279499089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS18_RS16630 - 3563316..3564713 (+) 1398 WP_279461007.1 peptide MFS transporter -
  QBS18_RS16635 - 3564788..3565759 (-) 972 WP_279461008.1 response regulator -
  QBS18_RS16640 - 3566000..3566698 (+) 699 WP_279461009.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11327.32 Da        Isoelectric Point: 9.6564

>NTDB_id=814831 QBS18_RS16620 WP_279499090.1 3561774..3562094(+) (comEA/comE1) [Aeromonas veronii strain LOID 16013]
MLMKKLSAVMLLACLPLFSQPVLAADKVAPKQTTTTVAAKEDGKLNINTATLAELTNLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814831 QBS18_RS16620 WP_279499090.1 3561774..3562094(+) (comEA/comE1) [Aeromonas veronii strain LOID 16013]
ATGCTGATGAAGAAACTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGTAGCGCCCAAGCAGACCACCACAACCGTTGCCGCCAAGGAGGACGGCAAACTGAATATCAATACCGCTACCCTTGCCG
AACTCACCAACCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGTCCTGCCACGCTGGAAGCCAATCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae C6706

48.113

100

0.481
  comEA Vibrio cholerae strain A1552

48.113

100

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comEA Vibrio campbellii strain DS40M4

41

94.34

0.387
  comE1/comEA Haemophilus influenzae Rd KW20

64.516

58.491

0.377