Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QBS04_RS16470 Genome accession   NZ_CP121854
Coordinates   3504959..3505279 (+) Length   106 a.a.
NCBI ID   WP_115521677.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 13997     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499959..3510279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS04_RS16455 yfbV 3500399..3500839 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  QBS04_RS16460 - 3501144..3502346 (+) 1203 WP_005349210.1 acetate kinase -
  QBS04_RS16465 pta 3502401..3504581 (+) 2181 WP_279465256.1 phosphate acetyltransferase -
  QBS04_RS16470 comE1/comEA 3504959..3505279 (+) 321 WP_115521677.1 ComEA family DNA-binding protein Machinery gene
  QBS04_RS16475 galU 3505376..3506287 (+) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS04_RS16480 - 3506501..3507898 (+) 1398 WP_040065012.1 peptide MFS transporter -
  QBS04_RS16485 - 3507973..3508944 (-) 972 WP_201908667.1 response regulator -
  QBS04_RS16490 - 3509184..3509882 (+) 699 WP_279465257.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11300.30 Da        Isoelectric Point: 9.6564

>NTDB_id=814803 QBS04_RS16470 WP_115521677.1 3504959..3505279(+) (comE1/comEA) [Aeromonas veronii strain ANYA 13997]
MLMKKLSAVMLLACLPLFSQPVLAVDKAAPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814803 QBS04_RS16470 WP_115521677.1 3504959..3505279(+) (comE1/comEA) [Aeromonas veronii strain ANYA 13997]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAACGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.528
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

48.113

100

0.481
  comEA Vibrio cholerae C6706

48.113

100

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368