Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QBS11_RS16415 Genome accession   NZ_CP121851
Coordinates   3534398..3534718 (+) Length   106 a.a.
NCBI ID   WP_058057222.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14022     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529398..3539718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS16400 yfbV 3529835..3530276 (-) 442 Protein_3159 terminus macrodomain insulation protein YfbV -
  QBS11_RS16405 - 3530581..3531783 (+) 1203 WP_005339118.1 acetate kinase -
  QBS11_RS16410 pta 3531839..3534019 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS11_RS16415 comEA 3534398..3534718 (+) 321 WP_058057222.1 ComEA family DNA-binding protein Machinery gene
  QBS11_RS16420 galU 3534815..3535726 (+) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS11_RS16425 - 3535940..3537337 (+) 1398 WP_058057221.1 peptide MFS transporter -
  QBS11_RS16430 - 3537412..3538383 (-) 972 WP_058057220.1 response regulator -
  QBS11_RS16435 - 3538622..3539320 (+) 699 WP_021231965.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11316.30 Da        Isoelectric Point: 9.6564

>NTDB_id=814776 QBS11_RS16415 WP_058057222.1 3534398..3534718(+) (comEA) [Aeromonas veronii strain ANYA 14022]
MLMKKLSAVMLLACLPLFSQPVLAADKTAPKQTTTAEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814776 QBS11_RS16415 WP_058057222.1 3534398..3534718(+) (comEA) [Aeromonas veronii strain ANYA 14022]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GACAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGACCGGCAAGCTGAACATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

50

100

0.5
  comEA Vibrio cholerae C6706

50

100

0.5
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

58.491

0.387
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377