Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QBS12_RS05950 Genome accession   NZ_CP121841
Coordinates   1255686..1256006 (-) Length   106 a.a.
NCBI ID   WP_064338737.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18196     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1250686..1261006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS12_RS05930 - 1251092..1251781 (-) 690 WP_279464362.1 DnaT-like ssDNA-binding domain-containing protein -
  QBS12_RS05935 - 1252022..1252993 (+) 972 WP_064341083.1 response regulator -
  QBS12_RS05940 - 1253067..1254464 (-) 1398 WP_064338739.1 peptide MFS transporter -
  QBS12_RS05945 galU 1254678..1255589 (-) 912 WP_064338738.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS12_RS05950 comEA/comE1 1255686..1256006 (-) 321 WP_064338737.1 ComEA family DNA-binding protein Machinery gene
  QBS12_RS05955 pta 1256386..1258566 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS12_RS05960 - 1258622..1259824 (-) 1203 WP_005349210.1 acetate kinase -
  QBS12_RS05965 yfbV 1260129..1260569 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11300.30 Da        Isoelectric Point: 9.6564

>NTDB_id=814583 QBS12_RS05950 WP_064338737.1 1255686..1256006(-) (comEA/comE1) [Aeromonas veronii strain ANYA 18196]
MLMKKLSAVMLLACLPLFSQPVLATDKVAPKQTTTAAVAKEDGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814583 QBS12_RS05950 WP_064338737.1 1255686..1256006(-) (comEA/comE1) [Aeromonas veronii strain ANYA 18196]
ATGCTGATGAAGAAACTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCACAGATAA
GGTAGCGCCCAAGCAAACAACCACGGCCGCGGTCGCCAAGGAGGACGGCAAACTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAGGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAATCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.673

100

0.519
  comEA Vibrio cholerae C6706

46.667

99.057

0.462
  comEA Vibrio cholerae strain A1552

46.667

99.057

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

91.509

0.396
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

58.491

0.387
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368