Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QBS07_RS08240 Genome accession   NZ_CP121837
Coordinates   1725386..1725706 (-) Length   106 a.a.
NCBI ID   WP_279488881.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18263     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720386..1730706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS07_RS08220 - 1720783..1721481 (-) 699 WP_021231965.1 DnaT-like ssDNA-binding domain-containing protein -
  QBS07_RS08225 - 1721722..1722693 (+) 972 WP_139740079.1 response regulator -
  QBS07_RS08230 - 1722767..1724164 (-) 1398 WP_005339123.1 peptide MFS transporter -
  QBS07_RS08235 galU 1724378..1725289 (-) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS07_RS08240 comE1/comEA 1725386..1725706 (-) 321 WP_279488881.1 ComEA family DNA-binding protein Machinery gene
  QBS07_RS08245 pta 1726084..1728264 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS07_RS08250 - 1728319..1729521 (-) 1203 WP_005349210.1 acetate kinase -
  QBS07_RS08255 yfbV 1729826..1730266 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11288.35 Da        Isoelectric Point: 9.6823

>NTDB_id=814528 QBS07_RS08240 WP_279488881.1 1725386..1725706(-) (comE1/comEA) [Aeromonas veronii strain ANYA 18263]
MLMKKLSAVMLLACLPLFCQPVLAVDKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814528 QBS07_RS08240 WP_279488881.1 1725386..1725706(-) (comE1/comEA) [Aeromonas veronii strain ANYA 18263]
ATGCTGATGAAGAAGCTCTCTGCTGTCATGCTGCTGGCCTGCTTGCCCCTGTTCTGCCAACCTGTGCTGGCCGTAGATAA
GGCCGCGCCCAAGCAAACAACCACGACCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.528
  comEA/comE1 Glaesserella parasuis strain SC1401

45.133

100

0.481
  comEA Vibrio cholerae C6706

47.17

100

0.472
  comEA Vibrio cholerae strain A1552

47.17

100

0.472
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

91.509

0.396
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368