Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QBS02_RS12490 Genome accession   NZ_CP121835
Coordinates   2645463..2645783 (-) Length   106 a.a.
NCBI ID   WP_279503550.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18462     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2640463..2650783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS02_RS12470 - 2640758..2641729 (+) 972 WP_279503546.1 response regulator -
  QBS02_RS12475 - 2641804..2643168 (-) 1365 WP_279503548.1 peptide MFS transporter -
  QBS02_RS12480 - 2643158..2644120 (-) 963 WP_279503549.1 IS1595 family transposase -
  QBS02_RS12485 galU 2644455..2645366 (-) 912 WP_167570525.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS02_RS12490 comE1/comEA 2645463..2645783 (-) 321 WP_279503550.1 ComEA family DNA-binding protein Machinery gene
  QBS02_RS12495 pta 2646161..2648341 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS02_RS12500 - 2648397..2649599 (-) 1203 WP_005349210.1 acetate kinase -
  QBS02_RS12505 yfbV 2649904..2650344 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11316.30 Da        Isoelectric Point: 9.6564

>NTDB_id=814503 QBS02_RS12490 WP_279503550.1 2645463..2645783(-) (comE1/comEA) [Aeromonas veronii strain ANYA 18462]
MLMKKLSAIMLLACLPLFSQPVLAADKATPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814503 QBS02_RS12490 WP_279503550.1 2645463..2645783(-) (comE1/comEA) [Aeromonas veronii strain ANYA 18462]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCCGTGTTGGCCGCAGATAA
GGCCACGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAACTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50.893

100

0.538
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae strain A1552

48.113

100

0.481
  comEA Vibrio cholerae C6706

48.113

100

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377