Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QBS23_RS13130 Genome accession   NZ_CP121833
Coordinates   2829197..2829517 (+) Length   106 a.a.
NCBI ID   WP_107682607.1    Uniprot ID   A0A2T4N712
Organism   Aeromonas veronii strain ANYA 18644     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2824197..2834517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS23_RS13115 yfbV 2824637..2825077 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  QBS23_RS13120 - 2825382..2826584 (+) 1203 WP_005349210.1 acetate kinase -
  QBS23_RS13125 pta 2826639..2828819 (+) 2181 WP_279499950.1 phosphate acetyltransferase -
  QBS23_RS13130 comE1/comEA 2829197..2829517 (+) 321 WP_107682607.1 ComEA family DNA-binding protein Machinery gene
  QBS23_RS13135 galU 2829614..2830525 (+) 912 WP_279499951.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS23_RS13140 - 2830739..2832136 (+) 1398 WP_279499952.1 peptide MFS transporter -
  QBS23_RS13145 - 2832211..2833182 (-) 972 WP_279499953.1 response regulator -
  QBS23_RS13150 - 2833423..2834121 (+) 699 WP_279499954.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11300.30 Da        Isoelectric Point: 9.6564

>NTDB_id=814466 QBS23_RS13130 WP_107682607.1 2829197..2829517(+) (comE1/comEA) [Aeromonas veronii strain ANYA 18644]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTAEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814466 QBS23_RS13130 WP_107682607.1 2829197..2829517(+) (comE1/comEA) [Aeromonas veronii strain ANYA 18644]
ATGCTGATGAAGAAGCTCTCTGCAATCATGTTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGACCGGCAAGCTGAATATTAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGTCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4N712

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

49.107

100

0.519
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377