Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QBS19_RS08655 Genome accession   NZ_CP121832
Coordinates   1674063..1674383 (-) Length   106 a.a.
NCBI ID   WP_139440512.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18661     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1669063..1679383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS19_RS08635 - 1669460..1670158 (-) 699 WP_139440511.1 DnaT-like ssDNA-binding domain-containing protein -
  QBS19_RS08640 - 1670398..1671369 (+) 972 WP_005339125.1 response regulator -
  QBS19_RS08645 - 1671444..1672841 (-) 1398 WP_040065012.1 peptide MFS transporter -
  QBS19_RS08650 galU 1673055..1673966 (-) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS19_RS08655 comE1/comEA 1674063..1674383 (-) 321 WP_139440512.1 ComEA family DNA-binding protein Machinery gene
  QBS19_RS08660 pta 1674761..1676941 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS19_RS08665 - 1676996..1678198 (-) 1203 WP_005349210.1 acetate kinase -
  QBS19_RS08670 yfbV 1678503..1678943 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11272.24 Da        Isoelectric Point: 9.6564

>NTDB_id=814447 QBS19_RS08655 WP_139440512.1 1674063..1674383(-) (comE1/comEA) [Aeromonas veronii strain ANYA 18661]
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814447 QBS19_RS08655 WP_139440512.1 1674063..1674383(-) (comE1/comEA) [Aeromonas veronii strain ANYA 18661]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCGCCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAACGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.528
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368