Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   RX577_RS29630 Genome accession   NZ_CP136399
Coordinates   6286366..6286890 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain UO299     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6281366..6291890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX577_RS29615 (RX577_29615) aroB 6282482..6283588 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  RX577_RS29620 (RX577_29620) aroK 6283638..6284156 (-) 519 WP_003095833.1 shikimate kinase AroK -
  RX577_RS29625 (RX577_29625) pilQ 6284168..6286312 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  RX577_RS29630 (RX577_29630) comL/pilP 6286366..6286890 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RX577_RS29635 (RX577_29635) pilO 6286887..6287510 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RX577_RS29640 (RX577_29640) pilN 6287507..6288103 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RX577_RS29645 (RX577_29645) pilM 6288103..6289167 (-) 1065 Protein_5867 type IV pilus assembly protein PilM -
  RX577_RS29650 (RX577_29650) - 6289352..6291823 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=814435 RX577_RS29630 WP_003095836.1 6286366..6286890(-) (comL/pilP) [Pseudomonas aeruginosa strain UO299]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=814435 RX577_RS29630 WP_003095836.1 6286366..6286890(-) (comL/pilP) [Pseudomonas aeruginosa strain UO299]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCTGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362