Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QBS21_RS16665 Genome accession   NZ_CP121817
Coordinates   3545895..3546215 (+) Length   106 a.a.
NCBI ID   WP_107682607.1    Uniprot ID   A0A2T4N712
Organism   Aeromonas veronii strain ANYA 19170     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540895..3551215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS21_RS16650 yfbV 3541331..3541771 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  QBS21_RS16655 - 3542076..3543278 (+) 1203 WP_279499315.1 acetate kinase -
  QBS21_RS16660 pta 3543334..3545514 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS21_RS16665 comE1/comEA 3545895..3546215 (+) 321 WP_107682607.1 ComEA family DNA-binding protein Machinery gene
  QBS21_RS16670 galU 3546312..3547223 (+) 912 WP_107682608.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS21_RS16675 - 3547437..3548834 (+) 1398 WP_040065012.1 peptide MFS transporter -
  QBS21_RS16680 - 3548909..3549880 (-) 972 WP_107682609.1 response regulator -
  QBS21_RS16685 - 3550119..3550817 (+) 699 WP_107682610.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11300.30 Da        Isoelectric Point: 9.6564

>NTDB_id=814423 QBS21_RS16665 WP_107682607.1 3545895..3546215(+) (comE1/comEA) [Aeromonas veronii strain ANYA 19170]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTAEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814423 QBS21_RS16665 WP_107682607.1 3545895..3546215(+) (comE1/comEA) [Aeromonas veronii strain ANYA 19170]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGACCGGCAAGCTGAACATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4N712

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

49.107

100

0.519
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377