Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | MARGE09_RS13095 | Genome accession | NZ_AP023086 |
| Coordinates | 3273705..3274871 (-) | Length | 388 a.a. |
| NCBI ID | WP_236982560.1 | Uniprot ID | A0AAN1WIN1 |
| Organism | Marinagarivorans cellulosilyticus strain GE09 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3268705..3279871
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MARGE09_RS13075 (MARGE09_P2505) | sdhD | 3269834..3270202 (-) | 369 | WP_236982552.1 | succinate dehydrogenase, hydrophobic membrane anchor protein | - |
| MARGE09_RS13080 (MARGE09_P2506) | sdhC | 3270196..3270573 (-) | 378 | WP_236982554.1 | succinate dehydrogenase, cytochrome b556 subunit | - |
| MARGE09_RS13085 (MARGE09_P2507) | - | 3271370..3272659 (+) | 1290 | WP_236982556.1 | citrate synthase | - |
| MARGE09_RS13090 (MARGE09_P2508) | - | 3272838..3273683 (+) | 846 | WP_236982558.1 | acyl-CoA thioesterase | - |
| MARGE09_RS13095 (MARGE09_P2509) | pilU | 3273705..3274871 (-) | 1167 | WP_236982560.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| MARGE09_RS13100 (MARGE09_P2510) | - | 3274951..3275301 (-) | 351 | WP_236982562.1 | nucleotide pyrophosphohydrolase | - |
| MARGE09_RS13105 (MARGE09_P2511) | - | 3275298..3276791 (-) | 1494 | WP_236982564.1 | AbgT family transporter | - |
| MARGE09_RS13110 (MARGE09_P2512) | arfB | 3276822..3277241 (-) | 420 | WP_236982566.1 | alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB | - |
| MARGE09_RS13115 (MARGE09_P2513) | - | 3277276..3279027 (-) | 1752 | WP_236982568.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
Sequence
Protein
Download Length: 388 a.a. Molecular weight: 42935.10 Da Isoelectric Point: 6.0710
>NTDB_id=81253 MARGE09_RS13095 WP_236982560.1 3273705..3274871(-) (pilU) [Marinagarivorans cellulosilyticus strain GE09]
MGTPIDQYLNILAKKDGSDLYLSTGAPPCAKFQGTLKPLSQTPFSGGQIRDIAYAIMDEKQQKDFEAELEMNLAISIHEV
GRFRINIFKQRNEVSIVARNINTEIPKFDDLGLPEILKEVIMTKRGLVLFVGGTGSGKSTSLAALIDHRNSSSGGHIITI
EDPVEYVHKHKKSVINQREVGVDTRTFKAALKNTLRQAPDVILIGEIRDRETMEHALEFAETGHLAISTLHANNANQALE
RIINLFPEERRAQLMLGLSQNLKAFVSQRLVPTVDGKRCAAIEVLLGTKTIQELILKNRLPEIKEIMEKSENLGMQTFDA
ALFKLHSAGKVSFDDAMAYADSPNNLRLRIKLAAEGNSNAVSSSGLPELSLEDIEEDTPPEEPPNTRF
MGTPIDQYLNILAKKDGSDLYLSTGAPPCAKFQGTLKPLSQTPFSGGQIRDIAYAIMDEKQQKDFEAELEMNLAISIHEV
GRFRINIFKQRNEVSIVARNINTEIPKFDDLGLPEILKEVIMTKRGLVLFVGGTGSGKSTSLAALIDHRNSSSGGHIITI
EDPVEYVHKHKKSVINQREVGVDTRTFKAALKNTLRQAPDVILIGEIRDRETMEHALEFAETGHLAISTLHANNANQALE
RIINLFPEERRAQLMLGLSQNLKAFVSQRLVPTVDGKRCAAIEVLLGTKTIQELILKNRLPEIKEIMEKSENLGMQTFDA
ALFKLHSAGKVSFDDAMAYADSPNNLRLRIKLAAEGNSNAVSSSGLPELSLEDIEEDTPPEEPPNTRF
Nucleotide
Download Length: 1167 bp
>NTDB_id=81253 MARGE09_RS13095 WP_236982560.1 3273705..3274871(-) (pilU) [Marinagarivorans cellulosilyticus strain GE09]
ATGGGCACCCCGATCGACCAATACTTAAACATTTTAGCGAAAAAAGATGGCTCGGATCTTTACCTCAGCACTGGCGCCCC
ACCTTGCGCTAAGTTTCAAGGCACATTAAAACCTTTATCACAAACCCCTTTTAGTGGCGGGCAAATTCGCGATATTGCTT
ATGCCATTATGGATGAAAAACAACAAAAGGACTTTGAAGCCGAATTGGAAATGAACCTAGCCATATCAATACATGAGGTG
GGTCGGTTTCGTATTAACATTTTTAAACAGCGCAACGAGGTTTCGATCGTTGCCCGCAATATCAATACCGAAATACCGAA
ATTCGACGATCTAGGGCTCCCTGAAATCCTCAAAGAAGTCATTATGACCAAGCGAGGCCTAGTGCTTTTTGTAGGCGGCA
CAGGGTCCGGTAAATCAACATCCTTAGCTGCTCTAATTGATCATCGCAACAGTAGCAGCGGCGGTCACATCATCACCATC
GAAGACCCCGTCGAGTATGTCCACAAACATAAAAAGAGTGTGATAAACCAGCGCGAAGTTGGCGTTGATACCCGCACCTT
TAAAGCCGCACTAAAAAACACCCTAAGGCAAGCTCCCGATGTGATTCTGATTGGCGAAATTCGCGACAGAGAGACCATGG
AGCACGCATTAGAATTTGCCGAGACTGGCCACCTTGCCATTTCAACGCTGCATGCTAACAACGCTAACCAAGCCTTAGAG
CGCATTATTAACCTTTTCCCCGAAGAACGCCGCGCCCAGCTAATGCTTGGCTTGTCGCAAAACTTAAAAGCCTTTGTTTC
CCAACGCTTGGTGCCCACAGTTGATGGCAAACGCTGCGCGGCCATTGAAGTCCTTTTAGGAACAAAAACCATTCAGGAGC
TAATCCTTAAAAACCGGCTACCCGAAATTAAAGAAATTATGGAAAAGTCGGAAAACTTAGGCATGCAAACCTTTGACGCC
GCACTGTTTAAGCTTCATTCGGCAGGCAAAGTCAGCTTCGACGACGCCATGGCCTACGCAGACTCTCCTAACAATTTGCG
TCTGCGCATTAAATTAGCCGCCGAAGGGAACAGTAACGCCGTGAGTTCATCAGGCCTGCCAGAGCTTAGCCTTGAGGATA
TAGAAGAAGATACCCCACCTGAAGAGCCGCCAAACACACGCTTTTAG
ATGGGCACCCCGATCGACCAATACTTAAACATTTTAGCGAAAAAAGATGGCTCGGATCTTTACCTCAGCACTGGCGCCCC
ACCTTGCGCTAAGTTTCAAGGCACATTAAAACCTTTATCACAAACCCCTTTTAGTGGCGGGCAAATTCGCGATATTGCTT
ATGCCATTATGGATGAAAAACAACAAAAGGACTTTGAAGCCGAATTGGAAATGAACCTAGCCATATCAATACATGAGGTG
GGTCGGTTTCGTATTAACATTTTTAAACAGCGCAACGAGGTTTCGATCGTTGCCCGCAATATCAATACCGAAATACCGAA
ATTCGACGATCTAGGGCTCCCTGAAATCCTCAAAGAAGTCATTATGACCAAGCGAGGCCTAGTGCTTTTTGTAGGCGGCA
CAGGGTCCGGTAAATCAACATCCTTAGCTGCTCTAATTGATCATCGCAACAGTAGCAGCGGCGGTCACATCATCACCATC
GAAGACCCCGTCGAGTATGTCCACAAACATAAAAAGAGTGTGATAAACCAGCGCGAAGTTGGCGTTGATACCCGCACCTT
TAAAGCCGCACTAAAAAACACCCTAAGGCAAGCTCCCGATGTGATTCTGATTGGCGAAATTCGCGACAGAGAGACCATGG
AGCACGCATTAGAATTTGCCGAGACTGGCCACCTTGCCATTTCAACGCTGCATGCTAACAACGCTAACCAAGCCTTAGAG
CGCATTATTAACCTTTTCCCCGAAGAACGCCGCGCCCAGCTAATGCTTGGCTTGTCGCAAAACTTAAAAGCCTTTGTTTC
CCAACGCTTGGTGCCCACAGTTGATGGCAAACGCTGCGCGGCCATTGAAGTCCTTTTAGGAACAAAAACCATTCAGGAGC
TAATCCTTAAAAACCGGCTACCCGAAATTAAAGAAATTATGGAAAAGTCGGAAAACTTAGGCATGCAAACCTTTGACGCC
GCACTGTTTAAGCTTCATTCGGCAGGCAAAGTCAGCTTCGACGACGCCATGGCCTACGCAGACTCTCCTAACAATTTGCG
TCTGCGCATTAAATTAGCCGCCGAAGGGAACAGTAACGCCGTGAGTTCATCAGGCCTGCCAGAGCTTAGCCTTGAGGATA
TAGAAGAAGATACCCCACCTGAAGAGCCGCCAAACACACGCTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
53.333 |
92.784 |
0.495 |
| pilU | Acinetobacter baylyi ADP1 |
53.846 |
90.464 |
0.487 |
| pilU | Vibrio cholerae strain A1552 |
49.138 |
89.691 |
0.441 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.054 |
94.588 |
0.379 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.936 |
88.144 |
0.361 |
| pilT | Pseudomonas aeruginosa PAK |
40.936 |
88.144 |
0.361 |