Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   P8P68_RS07300 Genome accession   NZ_CP121467
Coordinates   1488503..1489165 (+) Length   220 a.a.
NCBI ID   WP_000995720.1    Uniprot ID   A0AAX3THF8
Organism   Streptococcus sp. D7B5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483503..1494165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS07275 (P8P68_07275) tsf 1483905..1484945 (+) 1041 WP_278275825.1 translation elongation factor Ts -
  P8P68_RS07280 (P8P68_07280) cysK 1485034..1485960 (-) 927 WP_278275826.1 cysteine synthase A -
  P8P68_RS07285 (P8P68_07285) - 1486057..1486500 (-) 444 WP_278275827.1 PH domain-containing protein -
  P8P68_RS07290 (P8P68_07290) - 1486516..1487151 (-) 636 WP_278275828.1 YigZ family protein -
  P8P68_RS07295 (P8P68_07295) comFA/cflA 1487208..1488506 (+) 1299 WP_278275829.1 DEAD/DEAH box helicase Machinery gene
  P8P68_RS07300 (P8P68_07300) comFC/cflB 1488503..1489165 (+) 663 WP_000995720.1 ComF family protein Machinery gene
  P8P68_RS07305 (P8P68_07305) raiA 1489245..1489793 (+) 549 WP_000599111.1 ribosome-associated translation inhibitor RaiA -
  P8P68_RS07310 (P8P68_07310) - 1489875..1491053 (+) 1179 WP_000656057.1 acetyl-CoA C-acetyltransferase -
  P8P68_RS07315 (P8P68_07315) - 1491210..1493183 (+) 1974 WP_278275830.1 DHH family phosphoesterase -
  P8P68_RS07320 (P8P68_07320) rplI 1493180..1493632 (+) 453 WP_000864208.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24809.82 Da        Isoelectric Point: 8.1489

>NTDB_id=812247 P8P68_RS07300 WP_000995720.1 1488503..1489165(+) (comFC/cflB) [Streptococcus sp. D7B5]
MNCLLCGQTTKSELTFSSLFLLKDDCSYLCSACASSFEKIGENYCPNCMKTGMSTKCQDCKLWCKEGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFAPVLANELKKYGDYQFVLIPLSPGRLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=812247 P8P68_RS07300 WP_000995720.1 1488503..1489165(+) (comFC/cflB) [Streptococcus sp. D7B5]
ATGAACTGTTTACTATGTGGCCAGACTACAAAGAGTGAGCTGACTTTTAGCAGTCTCTTCCTTTTGAAGGATGACTGCAG
TTATCTTTGCTCAGCTTGTGCTTCTAGTTTTGAGAAGATTGGTGAGAATTATTGCCCAAACTGTATGAAAACAGGCATGT
CAACTAAGTGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAATTCAGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCGATATAAGTTTGATGGAGATTTTCTGCTTAGAAAGGTTTTTGCTCCTGTACTTGCTAA
TGAGTTGAAAAAGTATGGAGACTATCAATTTGTGTTGATTCCCCTAAGTCCTGGAAGATTGCTTGAGAGGGGATTTAACC
AGGTTGAAGGTTTGGTTGAGGCAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGCGCTAGTTCTTCT
AAAAGTCGTTTGGAAAGGTTAGCTACTGAAATTCCATTTTTTATTAAAGATGGTATCTCACTTCCTAAGAAGATTTTGCT
GATTGATGACATCTATACAACAGGGGCAACTGTGAATCGAGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(182-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae TIGR4

76.818

100

0.768
  comFC/cflB Streptococcus mitis SK321

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae D39

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae R6

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae Rx1

76.818

100

0.768
  comFC Bacillus subtilis subsp. subtilis str. 168

36.564

100

0.377