Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   P8P68_RS06920 Genome accession   NZ_CP121467
Coordinates   1418024..1419373 (-) Length   449 a.a.
NCBI ID   WP_278275804.1    Uniprot ID   A0AAX3THC1
Organism   Streptococcus sp. D7B5     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413024..1424373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS06910 (P8P68_06910) - 1413355..1417080 (-) 3726 WP_278275803.1 phosphoribosylformylglycinamidine synthase -
  P8P68_RS06915 (P8P68_06915) purC 1417148..1417855 (-) 708 WP_000043285.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  P8P68_RS06920 (P8P68_06920) comB 1418024..1419373 (-) 1350 WP_278275804.1 competence pheromone export protein ComB Regulator
  P8P68_RS06925 (P8P68_06925) comA 1419386..1421539 (-) 2154 WP_278275805.1 peptide cleavage/export ABC transporter ComA Regulator
  P8P68_RS06930 (P8P68_06930) - 1421703..1421898 (-) 196 Protein_1320 hypothetical protein -
  P8P68_RS06935 (P8P68_06935) - 1421900..1422109 (-) 210 WP_070696356.1 bacteriocin immunity protein -
  P8P68_RS06940 (P8P68_06940) - 1422134..1422322 (-) 189 WP_000722236.1 hypothetical protein -
  P8P68_RS06945 (P8P68_06945) - 1422332..1422499 (-) 168 WP_278275806.1 bacteriocin -
  P8P68_RS06950 (P8P68_06950) - 1422517..1422705 (-) 189 WP_049501355.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  P8P68_RS06955 (P8P68_06955) - 1423017..1423253 (-) 237 WP_000136435.1 acyl carrier protein -
  P8P68_RS06960 (P8P68_06960) plsX 1423259..1424251 (-) 993 WP_278275807.1 phosphate acyltransferase PlsX -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50013.01 Da        Isoelectric Point: 5.4001

>NTDB_id=812238 P8P68_RS06920 WP_278275804.1 1418024..1419373(-) (comB) [Streptococcus sp. D7B5]
MKSEFLESAEFYNRRYHNFSSRVILPMSLLLMFLLGFAVFAEKEISLSTRATVEPSRIIANIQSTSNQRIVANYLEENKL
VKQGELLVQYQQGAEAVQVEAYASQLEMLKDQKKQLGYLQSSLKEGSDQFPEADKFGYQEMFRDYLSQASSLRSNVSQQN
ASISSQNAAASQSQAEIGNLISQTEDKIRDYKTAKSAIEKGDQLDSQNPAYSFYQTYKNQGEEDPQAKSQVIAQVDAQIA
QLESSLATYRVQYAGSGAQQAHATGLDSQLESLKSQHLVKVGQELTLLDQKILEAESGKKVQGGLLDKGKITASEDGVLH
LNPETSDSTMVAEGTLLAQLYPSLEKEGKTKLTAYLSSKDVARVKIGDSVRYTTTNDAKNQIFLDSTITSIDATATKTEK
GNFFKIEAETHLTSEQAEKLRYGLEGRLQMITGKKSYLRYFWDQFLNKG

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=812238 P8P68_RS06920 WP_278275804.1 1418024..1419373(-) (comB) [Streptococcus sp. D7B5]
ATGAAATCAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTACCATAATTTTTCCAGTCGGGTGATTTTACCTAT
GTCACTTCTGCTCATGTTTTTACTGGGATTTGCAGTTTTTGCAGAGAAAGAGATTAGTTTGTCTACCAGAGCGACTGTCG
AACCTAGTCGGATCATTGCCAATATCCAGTCGACTAGCAATCAACGCATTGTGGCAAATTATCTGGAAGAAAACAAACTA
GTCAAGCAGGGGGAACTCCTCGTTCAGTACCAGCAAGGTGCGGAAGCTGTCCAGGTTGAGGCATATGCCAGTCAATTGGA
GATGTTAAAGGATCAAAAAAAGCAGTTGGGGTATTTGCAATCCAGTTTGAAAGAGGGGAGTGATCAATTTCCAGAGGCGG
ATAAGTTTGGTTATCAGGAGATGTTTCGAGACTATCTCAGCCAAGCTAGTAGTCTTAGGAGTAATGTTTCTCAGCAAAAT
GCCAGCATCTCCTCTCAAAATGCGGCAGCAAGTCAGAGCCAGGCCGAGATTGGCAATCTTATCAGTCAAACAGAGGATAA
AATTCGAGACTATAAAACAGCAAAGTCAGCGATTGAAAAGGGAGATCAACTGGATAGTCAGAATCCAGCCTACTCTTTTT
ATCAGACCTATAAAAATCAAGGTGAAGAAGATCCGCAAGCTAAATCGCAGGTTATTGCGCAAGTGGATGCACAAATTGCT
CAGCTAGAGTCCAGTCTAGCTACGTATCGTGTACAGTATGCGGGTTCTGGAGCTCAACAGGCTCATGCAACGGGACTGGA
TAGTCAACTGGAATCGCTCAAATCTCAGCACTTAGTCAAAGTCGGTCAGGAATTAACTCTTTTGGATCAGAAAATTTTGG
AGGCGGAATCGGGTAAGAAGGTACAGGGAGGTCTCCTAGATAAAGGGAAGATTACAGCAAGTGAGGATGGGGTGCTTCAC
CTCAATCCTGAGACTAGTGATTCTACCATGGTCGCAGAAGGAACCCTGCTAGCCCAACTCTACCCATCCTTGGAAAAAGA
AGGGAAAACCAAACTCACAGCTTATCTCAGTTCAAAAGATGTTGCTAGAGTCAAGATTGGGGACTCTGTTCGTTATACTA
CGACTAATGATGCGAAGAATCAAATTTTCCTGGATTCTACGATTACAAGTATCGATGCGACAGCTACAAAGACTGAAAAA
GGGAATTTCTTTAAAATTGAGGCGGAGACCCATCTGACTTCTGAGCAGGCTGAAAAACTTCGCTATGGTTTAGAAGGCCG
CCTGCAGATGATTACGGGAAAGAAAAGCTATCTCCGTTATTTTTGGGATCAATTTTTGAATAAAGGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mitis SK321

84.375

99.777

0.842
  comB Streptococcus pneumoniae Rx1

83.036

99.777

0.829
  comB Streptococcus pneumoniae D39

83.036

99.777

0.829
  comB Streptococcus pneumoniae R6

83.036

99.777

0.829
  comB Streptococcus pneumoniae TIGR4

82.589

99.777

0.824
  comB Streptococcus mitis NCTC 12261

82.366

99.777

0.822
  comB Streptococcus gordonii str. Challis substr. CH1

55.31

100

0.557