Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   P8P68_RS05210 Genome accession   NZ_CP121467
Coordinates   1056271..1058424 (+) Length   717 a.a.
NCBI ID   WP_070800392.1    Uniprot ID   -
Organism   Streptococcus sp. D7B5     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 1051271..1063424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS05165 (P8P68_05165) - 1051528..1051737 (-) 210 WP_049537864.1 Blp family class II bacteriocin -
  P8P68_RS05170 (P8P68_05170) - 1051753..1052001 (-) 249 Protein_998 Blp family class II bacteriocin -
  P8P68_RS05175 (P8P68_05175) - 1052245..1052448 (-) 204 WP_001099737.1 Blp family class II bacteriocin -
  P8P68_RS05180 (P8P68_05180) blpM 1052464..1052718 (-) 255 WP_000379951.1 two-peptide bacteriocin subunit BlpM -
  P8P68_RS05185 (P8P68_05185) - 1052969..1053994 (-) 1026 WP_070800394.1 thioredoxin domain-containing protein -
  P8P68_RS05190 (P8P68_05190) - 1054154..1054528 (-) 375 WP_125384985.1 immunity protein -
  P8P68_RS05195 (P8P68_05195) - 1054588..1054908 (-) 321 WP_000645118.1 hypothetical protein -
  P8P68_RS05200 (P8P68_05200) - 1054923..1055150 (-) 228 WP_247924455.1 bacteriocin class II family protein -
  P8P68_RS05205 (P8P68_05205) - 1055759..1055989 (-) 231 WP_247924443.1 bacteriocin class II family protein -
  P8P68_RS05210 (P8P68_05210) comA/nlmT 1056271..1058424 (+) 2154 WP_070800392.1 peptide cleavage/export ABC transporter BlpA Regulator
  P8P68_RS05215 (P8P68_05215) - 1058435..1059796 (+) 1362 WP_278275714.1 bacteriocin secretion accessory protein -
  P8P68_RS05220 (P8P68_05220) blpC 1059853..1060008 (+) 156 WP_000360258.1 quorum-sensing system pheromone BlpC -
  P8P68_RS05225 (P8P68_05225) - 1060051..1061391 (-) 1341 WP_221161141.1 sensor histidine kinase -
  P8P68_RS05230 (P8P68_05230) comE/blpR 1061405..1062142 (-) 738 WP_070800389.1 LytTR family DNA-binding domain-containing protein Regulator
  P8P68_RS05235 (P8P68_05235) - 1062147..1062485 (-) 339 WP_247924444.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  P8P68_RS05240 (P8P68_05240) - 1062764..1063093 (+) 330 WP_084940459.1 helicase BlpT -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80797.80 Da        Isoelectric Point: 7.6427

>NTDB_id=812217 P8P68_RS05210 WP_070800392.1 1056271..1058424(+) (comA/nlmT) [Streptococcus sp. D7B5]
MTSYKRTFVPQIDARDCGVAALASIAKFYGSDFSLAHLRELAKTNKEGTTALGIVKAANEMGFETRPVQADKTLFDMSDV
PYPFIVHVNKEGKLQHYYVVYQTKKDYLIIGDPDPSVKITKMSKERFFSEWTGVAIFLAPKPSYQPHKDKKNGLLSFLPL
IFKQKSLIAYIVLSSLLVTIINIGGSYYLQGILDEYIPNQMKSTLGIISIGLIITYILQQAMSFSRDYLLTVLSQRLSID
VILSYIRHIFELPMSFFATRRTGEIISRFTDANSIIDALASTILSLFLDVSILILVGGVLLAQNPNLFLLSLISIPIYMF
IIFSFMKPFEKMNHDVMQSNSMVSSAIIEDINGIETIKSLTSEENRYQNIDSEFVDYLEKSFKLTKYSILQTNLKQGTKL
VLNIFILWFGAQLVMSSKISIGQLITFNTLLSYFTTPMENIINLQTKLQSAKVANNRLNEVYLVESEFQVQENSVHSHFL
MGDIEFDDLSYKYGFGRDTLTDINLTIKEGDKVSLVGVSGSGKTTLAKMIVNFFDPYKGQITINHQDIKNIDKKILRRHI
NYLPQQAYIFNGSILENLTLGGNSMISQEDILKACELAEIRQDIERMPMGYQTQLSDGAGLSGGQKQRIALARALLTKSP
VLILDEATSALDVLTEKKVIDNLMSLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELIQAQGFYHHLFNK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=812217 P8P68_RS05210 WP_070800392.1 1056271..1058424(+) (comA/nlmT) [Streptococcus sp. D7B5]
ATGACTTCTTATAAACGTACATTTGTTCCTCAAATAGATGCTAGAGACTGTGGTGTCGCTGCCTTAGCCTCGATTGCCAA
ATTCTATGGTTCAGATTTTTCTCTAGCTCACTTGAGAGAACTTGCAAAGACCAATAAAGAAGGAACGACTGCTCTTGGCA
TTGTAAAAGCCGCAAATGAAATGGGTTTTGAAACAAGACCTGTTCAAGCAGATAAAACTCTCTTTGACATGAGTGATGTC
CCCTATCCATTTATTGTTCACGTTAACAAAGAAGGAAAACTCCAACATTACTATGTTGTCTATCAAACAAAGAAAGACTA
TCTGATTATTGGTGATCCTGATCCTTCTGTAAAAATCACCAAAATGTCAAAAGAACGCTTTTTCTCTGAATGGACTGGAG
TAGCTATTTTTCTAGCTCCCAAACCCAGCTATCAACCCCATAAAGATAAAAAGAATGGTCTACTGAGCTTCCTACCTCTG
ATTTTCAAACAAAAATCTCTCATTGCTTACATTGTTCTCTCAAGCTTATTAGTCACTATTATCAATATCGGTGGTTCTTA
TTATCTCCAAGGAATCTTAGATGAATACATCCCAAATCAGATGAAATCAACTTTAGGAATTATCTCAATTGGTCTAATTA
TCACCTATATCCTCCAACAAGCCATGAGCTTCTCCAGAGATTATCTCCTAACTGTTCTGAGTCAGAGATTAAGTATTGAT
GTGATTTTATCCTATATTCGCCATATTTTTGAACTTCCTATGTCTTTCTTTGCGACACGTCGTACAGGAGAAATCATTTC
ACGGTTCACAGATGCTAACTCTATTATAGATGCCTTGGCTTCTACCATTCTTTCTCTTTTTCTGGATGTTTCTATTCTGA
TTCTTGTAGGGGGCGTCTTACTGGCACAAAACCCTAATCTCTTCCTTCTTTCTCTTATTTCCATTCCTATATACATGTTC
ATCATCTTTTCTTTTATGAAGCCTTTCGAAAAAATGAACCATGATGTCATGCAAAGTAATTCTATGGTTAGCTCTGCTAT
TATCGAAGATATCAACGGGATTGAAACTATAAAGTCGCTCACGAGTGAAGAAAATCGCTATCAAAATATAGACAGCGAAT
TTGTCGATTATTTGGAAAAATCCTTTAAACTTACTAAATATTCTATTTTACAAACTAATTTAAAACAAGGAACAAAGTTA
GTTCTTAATATCTTTATCCTATGGTTTGGGGCTCAATTAGTTATGTCTAGTAAAATTTCTATCGGTCAGCTGATTACCTT
TAACACACTTCTTTCTTACTTTACAACTCCTATGGAAAATATTATCAACCTCCAAACCAAACTCCAATCTGCGAAGGTCG
CTAATAACCGTTTGAACGAAGTCTATCTAGTTGAATCTGAATTTCAAGTTCAAGAAAACTCTGTTCATTCACATTTTTTG
ATGGGCGATATTGAATTTGATGACCTTTCTTATAAGTATGGTTTTGGACGAGATACCTTAACAGATATCAATCTAACAAT
TAAAGAAGGTGATAAGGTTAGCCTGGTTGGAGTTAGTGGTTCTGGTAAAACAACTCTAGCCAAAATGATTGTCAATTTCT
TTGACCCTTACAAAGGACAGATTACCATCAATCATCAGGATATTAAAAATATTGATAAAAAAATCTTGCGACGTCATATT
AATTACCTGCCCCAACAAGCCTATATCTTTAATGGCTCTATCTTGGAAAACTTAACCTTGGGCGGTAATAGTATGATTAG
CCAAGAAGATATTCTAAAAGCTTGCGAATTAGCTGAAATCCGTCAAGATATTGAAAGAATGCCTATGGGCTATCAAACTC
AGCTCTCTGATGGAGCTGGTCTATCAGGAGGACAAAAGCAACGAATAGCCCTCGCTCGTGCTCTTTTAACTAAATCTCCT
GTTTTAATACTAGATGAAGCTACTAGTGCTCTCGATGTTTTGACTGAGAAAAAGGTTATAGATAATCTTATGTCCCTAAC
TGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGGACTAACCGTGTCATTGTTCTTGACCAAGGGA
AAATCATTGAAGTTGGTAGTCATCAAGAGTTAATACAGGCGCAAGGCTTCTACCATCATCTATTCAACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

71.888

99.721

0.717

  comA Streptococcus mitis NCTC 12261

66.199

99.442

0.658

  comA Streptococcus gordonii str. Challis substr. CH1

65.46

100

0.656

  comA Streptococcus pneumoniae Rx1

65.638

99.442

0.653

  comA Streptococcus pneumoniae D39

65.638

99.442

0.653

  comA Streptococcus pneumoniae R6

65.638

99.442

0.653

  comA Streptococcus mitis SK321

65.638

99.442

0.653

  comA Streptococcus pneumoniae TIGR4

65.358

99.442

0.65