Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   P3S51_RS11865 Genome accession   NZ_CP121303
Coordinates   2378164..2380272 (-) Length   702 a.a.
NCBI ID   WP_311917930.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2373164..2385272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS11850 (P3S51_11850) - 2375664..2376467 (-) 804 WP_311917927.1 hypothetical protein -
  P3S51_RS11855 (P3S51_11855) aroB 2376478..2377563 (-) 1086 WP_311917928.1 3-dehydroquinate synthase -
  P3S51_RS11860 (P3S51_11860) aroK 2377584..2378126 (-) 543 WP_321087551.1 shikimate kinase AroK -
  P3S51_RS11865 (P3S51_11865) pilQ 2378164..2380272 (-) 2109 WP_311917930.1 type IV pilus secretin PilQ Machinery gene
  P3S51_RS11870 (P3S51_11870) pilP 2380288..2380815 (-) 528 WP_311917931.1 pilus assembly protein PilP Machinery gene
  P3S51_RS11875 (P3S51_11875) pilO 2380815..2381498 (-) 684 WP_311917932.1 type 4a pilus biogenesis protein PilO Machinery gene
  P3S51_RS11880 (P3S51_11880) pilN 2381495..2382154 (-) 660 WP_311917933.1 PilN domain-containing protein Machinery gene
  P3S51_RS11885 (P3S51_11885) comM 2382154..2383212 (-) 1059 WP_311917934.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 75929.27 Da        Isoelectric Point: 5.6542

>NTDB_id=811756 P3S51_RS11865 WP_311917930.1 2378164..2380272(-) (pilQ) [Acinetobacter sp. ANC 7201]
MNNSTRDFIFGDGNTMNSLFRQFSMGAIAFAVVQTANAQLSITNIVPMEVPGQGTEIRVMFNGIPPQPAAYQLEQPSRLV
LDFEKAQQKLQQKVVPVATKEANSVDVSSDDQRSRLTVNLANSGAFTTRVEGNTFILKINSAETAVKAKNAPAQQQLAKG
VSNIGFQRGMDGEGQIVIDLLGKDTPVDVQQSGSKIIVRTIGNKIPTHLARRLNVNDFATPVSTIDSHNDGANGVITIQA
TGGYEYMAYQAENKLTISLKRPVDQNAAKPRLATSYTGQKLSLDFQDIEVRRVLQLLADFTNINIVAADNVSGSISLRLK
DVPWDQALDIILKAKNLDMRRTGNVIWVAPVEELIKFEDNQAKAIAQSIKLAPIQTEYIALHYAKAADILKLLEESRDSK
GAESNGTSGGGSLALESLLSARGSVVSDSRTNTLIINDTAVNIDKVRKMIGLLDVAVKQVMVEARVVTADTTFARELGIN
WNLQRGNPSLALGSNGSTVWGGDFSPKFDLGVELGTASAGSFSFGLLKISDYMLNLELTAMQSDGHGEVLSAPKVLTGDK
QKAYILRGDQIPYQTWSAESGVTTTFVDANLKLEVTPSITPDGKVQMALKIEKDTLGELTQAGYAIKTNELETNVLVGDG
ETVVLGGIFDDAKSNTYRKVPFLGDIPVVGNLFKNNVKTNLQSELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=811756 P3S51_RS11865 WP_311917930.1 2378164..2380272(-) (pilQ) [Acinetobacter sp. ANC 7201]
ATGAATAATAGTACAAGAGATTTTATATTTGGGGATGGTAATACAATGAACAGTTTGTTCCGTCAATTTTCTATGGGTGC
AATTGCATTTGCAGTAGTACAAACGGCAAATGCTCAATTGAGTATTACAAATATTGTCCCTATGGAAGTTCCTGGTCAAG
GAACTGAAATTCGTGTGATGTTTAATGGTATTCCACCGCAACCAGCGGCTTATCAGCTTGAACAGCCATCACGTCTTGTT
TTAGATTTTGAAAAAGCACAGCAAAAATTACAACAAAAAGTTGTTCCTGTTGCGACCAAAGAAGCAAATTCTGTTGATGT
AAGCTCAGATGATCAGCGTTCACGTCTAACCGTTAATTTAGCAAATTCAGGTGCGTTTACCACGCGTGTGGAAGGCAATA
CCTTTATTCTGAAAATTAATTCAGCAGAAACTGCTGTGAAAGCGAAAAATGCACCTGCGCAACAACAACTTGCGAAGGGC
GTTTCAAATATTGGCTTTCAGCGCGGTATGGATGGTGAAGGTCAAATTGTTATTGATTTGCTAGGAAAAGATACACCTGT
TGATGTACAGCAAAGTGGTAGCAAAATTATTGTGCGCACGATTGGTAATAAAATACCGACACATCTAGCACGTCGTTTAA
ATGTGAATGACTTTGCAACACCTGTATCAACAATTGATTCACATAATGATGGCGCAAATGGTGTAATCACTATTCAGGCA
ACGGGTGGCTATGAATACATGGCTTATCAAGCTGAAAACAAATTAACGATTAGTTTGAAGCGACCTGTTGATCAAAATGC
TGCGAAGCCTCGTTTGGCAACAAGCTATACAGGTCAAAAACTATCATTAGATTTTCAAGATATTGAAGTGCGCCGTGTAT
TGCAGCTTTTAGCAGATTTTACCAATATTAATATTGTGGCTGCTGATAATGTAAGTGGAAGTATTTCCTTGCGTTTAAAA
GATGTTCCTTGGGATCAAGCATTAGACATTATTTTAAAAGCTAAAAATTTAGATATGCGCCGTACAGGTAATGTAATTTG
GGTTGCACCTGTCGAAGAATTAATTAAATTTGAAGATAATCAAGCAAAAGCTATTGCGCAGAGCATTAAGCTTGCACCAA
TCCAAACAGAATATATTGCACTTCATTATGCTAAAGCGGCTGATATTCTGAAATTACTTGAAGAATCTAGAGATAGTAAA
GGTGCTGAATCGAATGGAACATCGGGCGGAGGGTCTTTGGCTTTAGAGAGTCTTTTAAGTGCTCGTGGTAGTGTAGTTTC
AGATTCAAGAACCAATACATTAATTATAAATGATACAGCTGTTAATATTGATAAAGTTCGAAAAATGATCGGCTTACTTG
ATGTTGCAGTAAAGCAAGTTATGGTTGAAGCACGGGTTGTAACAGCTGATACAACTTTCGCTCGTGAGTTGGGAATTAAT
TGGAATCTTCAAAGGGGCAATCCTTCATTAGCGCTAGGATCTAATGGCTCAACAGTTTGGGGAGGAGACTTCTCGCCTAA
ATTTGATTTGGGTGTTGAGTTGGGTACAGCATCAGCAGGTAGTTTTAGTTTTGGTTTATTAAAAATCTCAGATTACATGT
TGAATCTTGAATTAACAGCAATGCAATCGGATGGGCATGGTGAAGTACTTTCCGCACCAAAAGTTTTAACGGGCGATAAG
CAAAAAGCTTATATTCTTCGTGGTGATCAGATTCCATACCAAACATGGAGTGCAGAGTCAGGTGTGACTACAACTTTTGT
TGATGCTAACTTGAAGCTAGAAGTAACACCAAGCATTACACCAGATGGCAAAGTTCAAATGGCTTTAAAAATTGAAAAAG
ACACTTTAGGTGAGTTAACACAAGCTGGTTATGCAATTAAGACCAATGAACTAGAAACTAATGTTTTGGTTGGTGATGGT
GAAACTGTTGTGCTTGGTGGTATTTTTGATGATGCAAAAAGTAATACTTACAGAAAAGTACCATTCTTAGGTGATATTCC
TGTTGTTGGGAACTTATTTAAGAATAATGTGAAAACAAATCTTCAATCTGAGCTATTGATTTTTGTTACACCACGAATTG
TTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-459)

Secretin and TonB N terminus short domain (STN)

(304-350)

AMIN domain (AMIN)

(56-137)

Bacterial type II and III secretion system protein (Secretin)

(540-694)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

62.017

100

0.64
  pilQ Acinetobacter baumannii D1279779

62.017

100

0.64
  comQ Acinetobacter baylyi ADP1

59.888

100

0.608
  pilQ Pseudomonas aeruginosa PAK

39.162

98.575

0.386