Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   P3S51_RS11870 Genome accession   NZ_CP121303
Coordinates   2380288..2380815 (-) Length   175 a.a.
NCBI ID   WP_311917931.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2375288..2385815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS11850 (P3S51_11850) - 2375664..2376467 (-) 804 WP_311917927.1 hypothetical protein -
  P3S51_RS11855 (P3S51_11855) aroB 2376478..2377563 (-) 1086 WP_311917928.1 3-dehydroquinate synthase -
  P3S51_RS11860 (P3S51_11860) aroK 2377584..2378126 (-) 543 WP_321087551.1 shikimate kinase AroK -
  P3S51_RS11865 (P3S51_11865) pilQ 2378164..2380272 (-) 2109 WP_311917930.1 type IV pilus secretin PilQ Machinery gene
  P3S51_RS11870 (P3S51_11870) pilP 2380288..2380815 (-) 528 WP_311917931.1 pilus assembly protein PilP Machinery gene
  P3S51_RS11875 (P3S51_11875) pilO 2380815..2381498 (-) 684 WP_311917932.1 type 4a pilus biogenesis protein PilO Machinery gene
  P3S51_RS11880 (P3S51_11880) pilN 2381495..2382154 (-) 660 WP_311917933.1 PilN domain-containing protein Machinery gene
  P3S51_RS11885 (P3S51_11885) comM 2382154..2383212 (-) 1059 WP_311917934.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19108.18 Da        Isoelectric Point: 6.3308

>NTDB_id=811757 P3S51_RS11870 WP_311917931.1 2380288..2380815(-) (pilP) [Acinetobacter sp. ANC 7201]
MNIKTLTLLCFATATIVGCDSRIDAVNLQMVEIRSQAPLPIEPTPSFDPAPVFNYSALQQRSPFIQSSLAAELKLMAGKR
VYPNLSRPLQPLESYTLESLSMKGSFKNGAGQILALIQTPDGDVERVQVGSYMGTSYGRIVKITPTQIDLIEIIPDGRDG
YVERPRSLILIGLAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=811757 P3S51_RS11870 WP_311917931.1 2380288..2380815(-) (pilP) [Acinetobacter sp. ANC 7201]
ATGAATATTAAAACATTAACACTGCTTTGTTTTGCAACAGCAACAATTGTAGGCTGCGACTCTCGTATAGATGCAGTTAA
TTTGCAAATGGTTGAAATTCGTAGTCAAGCTCCATTGCCTATTGAACCAACACCTAGTTTTGATCCTGCGCCTGTTTTTA
ATTATTCAGCGCTTCAGCAGCGTAGTCCATTTATACAAAGCTCACTTGCTGCTGAACTAAAACTTATGGCGGGTAAGCGT
GTATATCCGAATTTATCACGCCCATTACAACCATTAGAAAGCTACACACTTGAATCTTTGAGTATGAAAGGTAGTTTTAA
AAATGGTGCAGGGCAAATTCTTGCTTTAATTCAAACACCTGATGGTGATGTTGAACGTGTTCAAGTTGGTAGCTACATGG
GAACAAGCTATGGGCGTATTGTGAAAATCACACCAACACAAATTGATTTAATTGAAATTATTCCAGACGGCAGAGATGGA
TATGTTGAACGTCCAAGAAGTCTAATTTTAATTGGGCTTGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(30-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

69.714

100

0.697
  comL Acinetobacter baylyi ADP1

65.714

100

0.657