Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   P3S51_RS11880 Genome accession   NZ_CP121303
Coordinates   2381495..2382154 (-) Length   219 a.a.
NCBI ID   WP_311917933.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2376495..2387154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS11860 (P3S51_11860) aroK 2377584..2378126 (-) 543 WP_321087551.1 shikimate kinase AroK -
  P3S51_RS11865 (P3S51_11865) pilQ 2378164..2380272 (-) 2109 WP_311917930.1 type IV pilus secretin PilQ Machinery gene
  P3S51_RS11870 (P3S51_11870) pilP 2380288..2380815 (-) 528 WP_311917931.1 pilus assembly protein PilP Machinery gene
  P3S51_RS11875 (P3S51_11875) pilO 2380815..2381498 (-) 684 WP_311917932.1 type 4a pilus biogenesis protein PilO Machinery gene
  P3S51_RS11880 (P3S51_11880) pilN 2381495..2382154 (-) 660 WP_311917933.1 PilN domain-containing protein Machinery gene
  P3S51_RS11885 (P3S51_11885) comM 2382154..2383212 (-) 1059 WP_311917934.1 pilus assembly protein PilM Machinery gene
  P3S51_RS11890 (P3S51_11890) ponA 2383379..2385892 (+) 2514 WP_311917935.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 4.8208

>NTDB_id=811759 P3S51_RS11880 WP_311917933.1 2381495..2382154(-) (pilN) [Acinetobacter sp. ANC 7201]
MAKINLLPWREELREKRKKQFIAASAGVALLGVLLVGLIWFFYDQKLNDQEQANQLILSTNQNLDQQLKSLDGLQEKRNQ
IIERMKLIQGLQSQRPIAVRLIDELARVTPENIYITRFTRTGNKFTFEGRAESPNAVAEFLRNLESSSWYRNAFMNSFLA
GAEQPQGQTSLVPRPEAGYGTFVVTADLDEPSIEAVAASQSAVITEEQVVEVSASEVVQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=811759 P3S51_RS11880 WP_311917933.1 2381495..2382154(-) (pilN) [Acinetobacter sp. ANC 7201]
ATGGCAAAGATTAATTTACTCCCTTGGCGCGAAGAGCTAAGAGAAAAGAGAAAGAAACAGTTTATTGCTGCAAGTGCAGG
TGTTGCTTTATTGGGTGTTTTACTTGTTGGATTGATATGGTTTTTTTATGATCAAAAACTAAATGATCAAGAACAAGCAA
ATCAGCTTATTTTGAGTACCAATCAGAATTTAGATCAACAATTAAAATCTTTAGATGGTTTACAAGAAAAGCGTAATCAG
ATCATCGAGCGTATGAAGTTGATTCAAGGTTTACAAAGCCAAAGACCAATTGCTGTTCGTTTAATTGATGAATTAGCGCG
AGTTACGCCTGAAAATATTTACATTACTCGTTTTACACGTACAGGTAATAAATTTACTTTTGAGGGACGAGCTGAAAGCC
CGAATGCAGTTGCAGAGTTTTTGCGCAATTTAGAATCGTCTTCATGGTATCGAAATGCATTTATGAACTCATTCCTTGCA
GGTGCTGAACAGCCTCAAGGTCAAACATCTCTAGTTCCACGTCCAGAGGCTGGCTATGGCACTTTTGTGGTAACTGCAGA
TTTAGATGAACCATCAATTGAAGCTGTTGCAGCATCGCAGTCAGCTGTGATTACAGAAGAACAAGTGGTTGAAGTTTCAG
CATCGGAGGTCGTGCAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

67.5

91.324

0.616
  comN Acinetobacter baylyi ADP1

69.634

87.215

0.607