Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   P7Y79_RS04380 Genome accession   NZ_CP121207
Coordinates   907541..908215 (+) Length   224 a.a.
NCBI ID   WP_074563738.1    Uniprot ID   A0AAE8HJU5
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 902541..913215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS04365 (P7Y79_04365) pstB 903157..903915 (+) 759 WP_039696859.1 phosphate ABC transporter ATP-binding protein PstB -
  P7Y79_RS04370 (P7Y79_04370) phoU 903946..904599 (+) 654 WP_039696860.1 phosphate signaling complex protein PhoU -
  P7Y79_RS04375 (P7Y79_04375) - 904831..907374 (+) 2544 WP_278007817.1 M1 family metallopeptidase -
  P7Y79_RS04380 (P7Y79_04380) ciaR 907541..908215 (+) 675 WP_074563738.1 response regulator transcription factor Regulator
  P7Y79_RS04385 (P7Y79_04385) ciaH 908205..909533 (+) 1329 WP_039696862.1 HAMP domain-containing sensor histidine kinase Regulator
  P7Y79_RS04390 (P7Y79_04390) rpsT 909618..909869 (-) 252 WP_004231769.1 30S ribosomal protein S20 -
  P7Y79_RS04395 (P7Y79_04395) coaA 909945..910865 (-) 921 WP_158913875.1 type I pantothenate kinase -
  P7Y79_RS04400 (P7Y79_04400) - 910997..911590 (+) 594 WP_157629041.1 class I SAM-dependent methyltransferase -
  P7Y79_RS04405 (P7Y79_04405) deoC 912092..912757 (+) 666 WP_074625712.1 deoxyribose-phosphate aldolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25487.09 Da        Isoelectric Point: 4.3047

>NTDB_id=811101 P7Y79_RS04380 WP_074563738.1 907541..908215(+) (ciaR) [Streptococcus ruminicola strain CNU_77-47]
MIKILLVEDDLSLSNSIFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKDGFQVLKELREQGITTPVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNDNTLSYHELTADTSTNTTTVNGEKVELLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTNFAKNLQTLRSVGYILKDAE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=811101 P7Y79_RS04380 WP_074563738.1 907541..908215(+) (ciaR) [Streptococcus ruminicola strain CNU_77-47]
ATGATTAAGATTTTATTAGTAGAAGATGATTTGAGTTTATCGAATTCAATCTTTGATTTTTTAGATGATTTTGCAGATGT
TATGCAAGTCTTTGATGGTGAAGAAGGGCTTTATGAGGCAGAAAGTGGTGTTTATGACCTCATTTTGCTTGATCTGATGT
TGCCAGAAAAAGATGGTTTCCAAGTTCTAAAAGAATTACGTGAACAAGGTATTACGACACCTGTCTTAATTATGACAGCC
AAAGAAAGCCTTGATGATAAAGGGCACGGTTTTGAACTTGGTGCTGATGATTATTTGACAAAACCATTTTATCTTGAAGA
ATTGAAGATGCGTATTCAAGCGCTTTTGAAACGCTCTGGAAAATTCAATGATAATACTCTTTCTTACCACGAATTAACAG
CTGATACATCAACTAACACAACAACTGTTAACGGTGAAAAGGTGGAGTTACTAGGTAAAGAATTTGATTTATTGGTTTAT
TTCTTGCAAAACCAAAATGTTATTTTGCCAAAATCACAAATTTTTGACCGTATTTGGGGATTTGATAGCGATACTACAAT
TTCAGTTGTTGAAGTTTATGTTTCTAAGATTCGCAAAAAATTAAAAGGGACAAATTTTGCTAAAAATCTACAAACACTTC
GTAGTGTAGGGTATATTCTAAAAGATGCTGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

92.825

99.554

0.924
  ciaR Streptococcus pneumoniae Rx1

87.946

100

0.879
  ciaR Streptococcus pneumoniae D39

87.946

100

0.879
  ciaR Streptococcus pneumoniae R6

87.946

100

0.879
  ciaR Streptococcus pneumoniae TIGR4

87.946

100

0.879
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.326

100

0.388
  vicR Streptococcus mutans UA159

34.764

100

0.362