Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   P7Y79_RS03350 Genome accession   NZ_CP121207
Coordinates   695848..697821 (+) Length   657 a.a.
NCBI ID   WP_039696673.1    Uniprot ID   A0AAE6UYV6
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 690848..702821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS03325 (P7Y79_03325) rpsU 691458..691634 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  P7Y79_RS03330 (P7Y79_03330) mscL 691707..692090 (-) 384 WP_074560554.1 large conductance mechanosensitive channel protein MscL -
  P7Y79_RS03335 (P7Y79_03335) dnaG 692208..694016 (+) 1809 WP_278007835.1 DNA primase -
  P7Y79_RS03340 (P7Y79_03340) rpoD 694025..695134 (+) 1110 WP_024343868.1 RNA polymerase sigma factor RpoD -
  P7Y79_RS03345 (P7Y79_03345) - 695157..695492 (+) 336 WP_039696672.1 metal-sulfur cluster assembly factor -
  P7Y79_RS03350 (P7Y79_03350) amiA 695848..697821 (+) 1974 WP_039696673.1 peptide ABC transporter substrate-binding protein Regulator
  P7Y79_RS03355 (P7Y79_03355) amiC 697889..699391 (+) 1503 WP_074799225.1 ABC transporter permease Regulator
  P7Y79_RS03360 (P7Y79_03360) amiD 699391..700317 (+) 927 WP_158914123.1 oligopeptide ABC transporter permease OppC Regulator
  P7Y79_RS03365 (P7Y79_03365) amiE 700326..701396 (+) 1071 WP_039696676.1 ABC transporter ATP-binding protein Regulator
  P7Y79_RS03370 (P7Y79_03370) amiF 701389..702315 (+) 927 WP_278007731.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73446.32 Da        Isoelectric Point: 5.6623

>NTDB_id=811091 P7Y79_RS03350 WP_039696673.1 695848..697821(+) (amiA) [Streptococcus ruminicola strain CNU_77-47]
MFMKKYLTVAGVALLSVSLLQGCSNSKSTKQKSNVYSYVYVSDPNTLDYTASGRVTTSSVTTQGIDGLLENDKYGNLVPS
LAKDWKVSADGLTYTYKLRKGVMWYTSDGEEYAEVTANDFVTGLKHAADKKSDALYIVQNSIKGLDDYVSGATKDFSTVG
VKALDKYTVQYTLNKPETYWNSKTTYGVLQPVNKDFLKAKGKNFGSVDPSSILYNGPFILKSLTSKSSIEFDKNENYWDA
KHVKLDGVKLTYYDGSDPESLYKNFEKGNYSCSRLYPTKPDFKKIEKNHKNEINYSLQDQSTYFVVFNLNRKAYDFTSKN
SDTQKNDTHEAILNKDFRQAVTFAFNRAAYNSQNVGQEASTKSLRSMFVPPKFVSSDGKDFGDYVKDELGDNPTWKDVDL
SDAKDGLYNVDKAKAAFAKAKSTLQNEGVQFPIHLDFPVDQTRDITTQQANSFKQSVEASLGKDNVVVDIQKESEEDYQR
TGYFAESADQKDYDLSQDSGWSPDYDDPSTYLDILNSDTGTSIKNSGIDSSTDEGKEVAQRVGLDQFNKLVTDANNVTDD
VTARYTDYAKAQAWLTDSAIIIPTTSLGGSPSVSKVVPFSASYSTSGVKGSECYKYYQLQDKPVTVKQYKKALNSWKKAK
DKSNTEYQEKLSEHIEK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=811091 P7Y79_RS03350 WP_039696673.1 695848..697821(+) (amiA) [Streptococcus ruminicola strain CNU_77-47]
ATGTTTATGAAAAAATATTTAACTGTCGCAGGAGTTGCACTTTTATCGGTTTCGCTTTTACAAGGATGTTCTAATTCAAA
ATCGACTAAGCAAAAATCAAATGTTTATTCTTATGTCTATGTTTCTGATCCGAATACACTAGATTATACAGCATCAGGTC
GAGTAACTACATCATCTGTAACAACTCAGGGAATAGATGGTTTGCTAGAGAATGATAAATATGGTAATTTAGTGCCTTCT
CTTGCAAAAGATTGGAAAGTTTCAGCTGATGGTTTAACTTATACCTATAAGTTGAGAAAAGGCGTTATGTGGTACACTTC
TGATGGGGAAGAATATGCAGAAGTTACGGCGAATGATTTTGTTACAGGATTAAAGCATGCAGCTGATAAGAAATCAGACG
CCCTTTACATTGTGCAAAATTCAATAAAAGGTTTGGATGATTATGTTAGTGGTGCTACAAAAGATTTTTCAACTGTTGGC
GTTAAGGCGTTAGACAAATATACTGTTCAGTATACTTTGAATAAACCTGAAACCTATTGGAATTCTAAGACGACCTATGG
TGTACTTCAACCAGTTAATAAAGATTTCTTGAAGGCAAAGGGTAAAAATTTTGGCTCTGTAGATCCATCTAGTATTCTTT
ATAATGGTCCGTTTATTTTGAAATCTTTAACTTCTAAATCTTCAATTGAGTTTGATAAAAATGAAAATTACTGGGATGCT
AAGCACGTAAAACTTGATGGGGTTAAACTAACTTATTATGATGGTTCAGATCCAGAATCCCTTTATAAAAATTTTGAAAA
AGGAAATTACAGCTGTTCAAGACTATACCCAACAAAACCAGATTTTAAGAAAATTGAAAAGAACCATAAAAATGAAATTA
ATTACTCATTACAGGATCAATCAACCTATTTTGTTGTCTTTAATTTGAATCGTAAAGCTTATGATTTTACTTCAAAAAAC
AGTGATACTCAAAAAAATGATACCCATGAAGCTATTTTAAATAAAGACTTCCGTCAAGCTGTTACTTTTGCATTTAACAG
AGCAGCCTATAATTCACAAAATGTTGGTCAAGAGGCTTCAACTAAATCACTTCGTAGTATGTTTGTGCCACCAAAATTTG
TGTCTTCTGATGGCAAAGATTTTGGTGATTATGTTAAAGATGAGTTAGGTGACAATCCAACTTGGAAAGATGTTGATCTT
TCAGATGCTAAAGATGGATTATACAATGTTGATAAGGCAAAAGCAGCATTCGCTAAAGCAAAATCTACATTGCAAAATGA
AGGTGTTCAATTCCCAATTCACCTAGACTTTCCTGTAGATCAAACAAGAGATATTACGACACAACAAGCTAATTCATTTA
AGCAATCTGTTGAAGCATCACTCGGTAAGGATAACGTCGTTGTTGATATTCAAAAAGAAAGTGAAGAAGATTATCAACGT
ACAGGATATTTTGCAGAATCAGCTGATCAAAAGGATTATGATTTGTCTCAAGACTCTGGATGGAGTCCTGATTATGATGA
CCCTTCCACTTATCTTGATATCTTAAATTCAGATACAGGTACTTCAATTAAAAATAGTGGTATTGATTCATCAACTGATG
AAGGTAAAGAAGTTGCTCAAAGAGTAGGATTAGATCAGTTCAATAAATTAGTTACGGATGCAAATAATGTTACTGACGAT
GTAACTGCCCGTTATACAGATTATGCAAAAGCTCAAGCATGGTTGACGGACAGTGCTATTATTATACCAACGACATCTTT
AGGTGGTAGCCCATCAGTTTCAAAAGTTGTTCCGTTTTCAGCTTCTTATTCAACATCTGGAGTTAAAGGTAGTGAATGTT
ACAAATATTATCAATTGCAAGATAAGCCTGTTACGGTTAAACAATACAAAAAAGCTTTAAATAGTTGGAAAAAGGCTAAA
GATAAATCAAACACAGAATATCAAGAAAAGCTTTCTGAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.394

100

0.539
  amiA3 Streptococcus thermophilus LMG 18311

51.205

100

0.518
  amiA3 Streptococcus thermophilus LMD-9

51.054

100

0.516