Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P7Y79_RS03370 Genome accession   NZ_CP121207
Coordinates   701389..702315 (+) Length   308 a.a.
NCBI ID   WP_278007731.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 696389..707315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS03355 (P7Y79_03355) amiC 697889..699391 (+) 1503 WP_074799225.1 ABC transporter permease Regulator
  P7Y79_RS03360 (P7Y79_03360) amiD 699391..700317 (+) 927 WP_158914123.1 oligopeptide ABC transporter permease OppC Regulator
  P7Y79_RS03365 (P7Y79_03365) amiE 700326..701396 (+) 1071 WP_039696676.1 ABC transporter ATP-binding protein Regulator
  P7Y79_RS03370 (P7Y79_03370) amiF 701389..702315 (+) 927 WP_278007731.1 ATP-binding cassette domain-containing protein Regulator
  P7Y79_RS03375 (P7Y79_03375) - 702482..703636 (+) 1155 WP_074560552.1 DUF1972 domain-containing protein -
  P7Y79_RS03380 (P7Y79_03380) - 703626..704558 (+) 933 WP_158914121.1 glycosyltransferase family 2 protein -
  P7Y79_RS03385 (P7Y79_03385) - 704559..705365 (+) 807 WP_158914119.1 ABC transporter permease -
  P7Y79_RS03390 (P7Y79_03390) - 705365..706576 (+) 1212 WP_158914117.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35311.49 Da        Isoelectric Point: 6.0620

>NTDB_id=811095 P7Y79_RS03370 WP_278007731.1 701389..702315(+) (amiF) [Streptococcus ruminicola strain CNU_77-47]
MPEKLVDIRNLEISFGEESKKFTAVKNANFFINKGETFSLVGESGSGKTTIARAIVGLNETSAGEIIFEGKRINTRLSKA
EKGNLIQKIQMIFQDPAASLNERATVDYIISEGLYNFKLYKDEEERRQKVREIIEKVGLLPEHLTRYPHEFSGGQRQRIG
IARTLVMNPEFIIADEPISALDVSVRAQVLNLLKEIQRENGMTYLFIAHDLSVVRFISDRIAVIHQGVIVEIAETEELFH
HPIHPYTKSLLSAVPIPDPILERQKELVVYDPNQHDYTVDKPQMFEIKPNHFIWANQEEIKKYQQELL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=811095 P7Y79_RS03370 WP_278007731.1 701389..702315(+) (amiF) [Streptococcus ruminicola strain CNU_77-47]
ATGCCTGAAAAATTAGTAGATATTCGAAATTTAGAAATCTCATTTGGTGAGGAAAGTAAGAAATTTACTGCTGTAAAAAA
TGCGAATTTCTTTATCAACAAAGGAGAGACGTTCTCGCTTGTCGGAGAATCAGGAAGTGGAAAAACAACGATTGCACGAG
CAATAGTAGGTCTTAATGAGACAAGTGCTGGAGAAATTATTTTTGAAGGTAAGAGAATCAATACGAGATTGAGTAAGGCT
GAAAAAGGAAATCTTATTCAAAAGATTCAGATGATATTTCAGGATCCAGCAGCCAGTTTAAATGAGCGAGCAACAGTAGA
TTATATCATTTCTGAAGGTCTATATAATTTTAAATTATACAAAGACGAAGAAGAACGTAGACAAAAAGTTAGAGAAATTA
TTGAAAAGGTAGGTTTGTTACCAGAACATTTAACACGATATCCTCATGAATTTTCAGGTGGACAACGACAACGTATTGGA
ATTGCAAGAACGCTTGTAATGAATCCAGAATTTATTATAGCTGATGAACCAATTTCAGCTTTGGATGTTTCAGTTAGAGC
ACAGGTACTTAATTTGTTGAAAGAGATTCAAAGAGAAAATGGTATGACATACTTGTTTATCGCGCACGACCTGTCAGTTG
TACGTTTCATTTCAGATCGTATTGCAGTTATTCATCAAGGGGTGATTGTTGAGATTGCTGAAACTGAGGAGTTATTTCAC
CATCCTATTCATCCTTATACTAAATCTCTGTTGTCTGCAGTTCCAATTCCAGATCCAATCTTAGAACGCCAAAAAGAATT
GGTTGTCTATGATCCGAATCAACATGATTATACAGTTGACAAGCCTCAGATGTTTGAAATAAAACCCAATCATTTTATTT
GGGCTAATCAAGAAGAAATTAAAAAGTATCAACAAGAGTTATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

78.758

99.351

0.782
  amiF Streptococcus thermophilus LMG 18311

78.431

99.351

0.779
  amiF Streptococcus salivarius strain HSISS4

77.778

99.351

0.773