Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   P7Y79_RS03360 Genome accession   NZ_CP121207
Coordinates   699391..700317 (+) Length   308 a.a.
NCBI ID   WP_158914123.1    Uniprot ID   A0AAE6R4C4
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 694391..705317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS03345 (P7Y79_03345) - 695157..695492 (+) 336 WP_039696672.1 metal-sulfur cluster assembly factor -
  P7Y79_RS03350 (P7Y79_03350) amiA 695848..697821 (+) 1974 WP_039696673.1 peptide ABC transporter substrate-binding protein Regulator
  P7Y79_RS03355 (P7Y79_03355) amiC 697889..699391 (+) 1503 WP_074799225.1 ABC transporter permease Regulator
  P7Y79_RS03360 (P7Y79_03360) amiD 699391..700317 (+) 927 WP_158914123.1 oligopeptide ABC transporter permease OppC Regulator
  P7Y79_RS03365 (P7Y79_03365) amiE 700326..701396 (+) 1071 WP_039696676.1 ABC transporter ATP-binding protein Regulator
  P7Y79_RS03370 (P7Y79_03370) amiF 701389..702315 (+) 927 WP_278007731.1 ATP-binding cassette domain-containing protein Regulator
  P7Y79_RS03375 (P7Y79_03375) - 702482..703636 (+) 1155 WP_074560552.1 DUF1972 domain-containing protein -
  P7Y79_RS03380 (P7Y79_03380) - 703626..704558 (+) 933 WP_158914121.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34956.03 Da        Isoelectric Point: 8.8338

>NTDB_id=811093 P7Y79_RS03360 WP_158914123.1 699391..700317(+) (amiD) [Streptococcus ruminicola strain CNU_77-47]
MEKIDKKQFEFVGLDSSASEIIDAPTYSYWKSVFKQFFSKKSTFFMLAILIAIIFMSFVYPFFVHCNFNDVSNINDFSKR
YIWPNSQYWFGTDKDGRSLFDCVWYGARNSILISVLATVINIILGVVIGGIWGVSKTVDTIMIEVYNVVSNIPQLLIIMV
LTYSLGAGFWNMILAFCITGWIGIAYSIRVQILRYRDLEYNLASQILGTSKFRIVVKNLLPQLISVIVTMVSQLLPSYIS
YEAFLSYFGIGLPISVPSLGRLISNYSSNLTTNAYLFWIPLTVLVLVSLPLYIIGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=811093 P7Y79_RS03360 WP_158914123.1 699391..700317(+) (amiD) [Streptococcus ruminicola strain CNU_77-47]
GTGGAAAAAATTGATAAGAAACAATTTGAATTTGTTGGTTTAGATAGTTCGGCTTCAGAAATTATCGACGCTCCAACTTA
TTCTTATTGGAAATCTGTTTTTAAACAATTTTTCTCTAAAAAATCTACTTTCTTTATGCTAGCAATATTGATTGCAATCA
TTTTTATGAGTTTTGTCTATCCATTCTTTGTTCATTGTAATTTTAATGATGTCAGTAATATTAATGACTTTTCGAAACGT
TATATTTGGCCGAATAGTCAGTATTGGTTTGGTACGGACAAAGATGGTAGATCTTTATTTGATTGTGTATGGTACGGTGC
TAGAAATTCTATTTTAATTTCTGTTTTAGCAACAGTTATTAATATAATTTTAGGGGTTGTTATTGGTGGCATATGGGGTG
TCTCAAAAACAGTTGATACCATTATGATTGAGGTATATAACGTTGTCTCAAATATTCCTCAGTTGTTAATTATTATGGTC
TTAACCTATTCTTTGGGTGCAGGTTTTTGGAATATGATACTTGCATTCTGTATTACAGGATGGATTGGAATTGCTTATTC
GATTCGTGTCCAAATCTTACGTTATCGTGATTTAGAATACAATCTTGCTAGTCAAATTTTAGGAACATCAAAATTTAGAA
TTGTTGTTAAGAATTTATTGCCACAACTGATTTCGGTAATTGTGACTATGGTATCTCAGTTATTACCATCCTACATTTCA
TATGAAGCCTTTCTTTCTTATTTTGGTATTGGGCTTCCAATTTCAGTTCCAAGTCTAGGGCGCTTGATTTCAAATTATTC
CTCTAATTTAACGACTAATGCTTACTTATTTTGGATTCCTTTGACGGTTTTGGTATTGGTATCTTTGCCGTTATATATCA
TTGGGCAAAATCTTGCTGATGCAAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

71.104

100

0.711
  amiD Streptococcus thermophilus LMG 18311

70.13

100

0.701
  amiD Streptococcus thermophilus LMD-9

70.13

100

0.701