Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   P7Y79_RS00025 Genome accession   NZ_CP121207
Coordinates   4256..5512 (-) Length   418 a.a.
NCBI ID   WP_278007483.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1..10512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS00010 (P7Y79_00010) dnaN 553..1689 (-) 1137 WP_039696079.1 DNA polymerase III subunit beta -
  P7Y79_RS00015 (P7Y79_00015) dnaA 1848..3203 (-) 1356 WP_278007481.1 chromosomal replication initiator protein DnaA -
  P7Y79_RS00020 (P7Y79_00020) spo0J 3407..4189 (-) 783 WP_278007482.1 ParB/RepB/Spo0J family partition protein Regulator
  P7Y79_RS00025 (P7Y79_00025) htrA 4256..5512 (-) 1257 WP_278007483.1 trypsin-like peptidase domain-containing protein Regulator
  P7Y79_RS00030 (P7Y79_00030) rlmH 5728..6207 (+) 480 WP_039696083.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  P7Y79_RS00050 (P7Y79_00050) - 7025..9601 (-) 2577 WP_278007484.1 YfhO family protein -

Sequence


Protein


Download         Length: 418 a.a.        Molecular weight: 43438.64 Da        Isoelectric Point: 4.7392

>NTDB_id=811068 P7Y79_RS00025 WP_278007483.1 4256..5512(-) (htrA) [Streptococcus ruminicola strain CNU_77-47]
MKKIKFRKVNYKKILKPLSVILVGFIGGVAGTLLMLNMAGISINNVSGSSTKTTTSKVSYSNTNDTTKAVEKVGEAVVSV
INYQSNSSSNDLYMQMFGGNLDNNTNNNGSDSDLSIASEGSGVIYKKDGNSAYVVTNNHVVDGASQIEIMLSDGTKVVGE
LVGADTYSDIAVVKISSDKVTTVAEFADSDKITVGETAIAIGSPLGTDYANSVTQGIVSSLSRTVTMTNDDGETISTNAI
QTDAAINPGNSGGALINIEGQVIGINSSKISSTSDSGSGNSVEGMGFAIPANDVIKIINQLEANGKVIRPALGITMANLS
DLSTTTISRLNIPTSVTAGIVVASVQSGMPAEGALKKYDVITAIDDKDVSSITDLQSVLYGHSTGDSIKVTFYRGTDKKT
ETIKLTKTTQDLSSSSNQ

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=811068 P7Y79_RS00025 WP_278007483.1 4256..5512(-) (htrA) [Streptococcus ruminicola strain CNU_77-47]
GTGAAAAAAATAAAATTTCGAAAAGTCAATTACAAAAAAATCCTTAAACCACTATCCGTTATTTTAGTTGGTTTCATCGG
AGGAGTTGCTGGGACCTTACTCATGTTGAATATGGCTGGCATCTCTATTAATAATGTTAGTGGTTCAAGTACAAAAACCA
CAACAAGTAAAGTAAGTTACTCAAATACTAATGATACGACGAAAGCTGTCGAAAAAGTGGGAGAAGCAGTCGTATCAGTC
ATCAATTATCAATCAAATAGCTCTTCAAATGATTTGTATATGCAAATGTTTGGTGGCAATTTAGATAATAACACTAATAA
TAATGGCTCAGATAGTGATTTAAGCATCGCTAGTGAAGGTTCTGGGGTTATTTACAAAAAAGATGGCAATTCTGCTTACG
TCGTTACTAATAACCACGTTGTCGATGGTGCTAGTCAAATCGAAATCATGCTTTCTGACGGTACAAAAGTAGTCGGTGAA
TTAGTCGGTGCCGATACATACTCAGATATCGCCGTTGTCAAAATTTCTTCTGATAAAGTCACAACAGTAGCTGAATTTGC
TGATTCAGATAAAATTACTGTTGGTGAAACAGCCATTGCTATTGGTAGCCCTCTAGGTACTGATTACGCTAACTCAGTAA
CCCAAGGAATTGTCTCAAGTCTAAGCCGTACAGTTACAATGACTAACGACGATGGCGAAACAATTTCAACTAATGCTATC
CAAACTGATGCCGCTATTAACCCAGGTAACTCTGGTGGTGCTTTGATTAACATTGAAGGACAAGTTATCGGTATTAATTC
AAGTAAAATTTCTTCTACCTCAGATTCTGGATCAGGTAATTCTGTAGAAGGTATGGGATTTGCTATTCCAGCTAATGATG
TGATTAAAATTATTAATCAATTAGAAGCAAACGGAAAAGTTATCCGTCCAGCACTTGGTATCACAATGGCTAACCTAAGC
GATTTATCAACAACAACAATCAGTCGCCTAAATATTCCAACTAGCGTCACAGCTGGTATCGTCGTTGCTTCAGTTCAATC
AGGTATGCCTGCTGAAGGAGCACTTAAAAAATACGATGTCATCACAGCTATCGATGATAAAGATGTTTCTTCTATCACAG
ATCTTCAAAGTGTCCTTTACGGTCATTCAACTGGAGATTCTATTAAGGTAACCTTCTATCGTGGTACTGACAAGAAAACA
GAAACTATTAAACTAACGAAAACAACACAAGACCTCTCTTCATCATCAAATCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

64.179

96.172

0.617

  htrA Streptococcus mitis NCTC 12261

58.852

100

0.589

  htrA Streptococcus gordonii str. Challis substr. CH1

60.345

97.129

0.586

  htrA Streptococcus pneumoniae TIGR4

58.981

98.565

0.581

  htrA Streptococcus pneumoniae D39

58.981

98.565

0.581

  htrA Streptococcus pneumoniae Rx1

58.981

98.565

0.581

  htrA Streptococcus pneumoniae R6

58.981

98.565

0.581