Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   P7F70_RS07970 Genome accession   NZ_CP121201
Coordinates   1581585..1581959 (-) Length   124 a.a.
NCBI ID   WP_278023979.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576585..1586959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS07965 (P7F70_07970) raiA 1580956..1581504 (-) 549 WP_115130705.1 ribosome-associated translation inhibitor RaiA -
  P7F70_RS07970 (P7F70_07975) comFC/cflB 1581585..1581959 (-) 375 WP_278023979.1 phosphoribosyltransferase family protein Machinery gene
  P7F70_RS07975 (P7F70_07980) comFA/cflA 1582244..1583545 (-) 1302 WP_278023980.1 DEAD/DEAH box helicase Machinery gene
  P7F70_RS07980 (P7F70_07985) - 1583592..1584221 (+) 630 WP_278023981.1 YigZ family protein -
  P7F70_RS07985 (P7F70_07990) cysK 1584319..1585248 (+) 930 WP_278023982.1 cysteine synthase A -
  P7F70_RS07990 (P7F70_07995) tnpA 1585401..1585913 (-) 513 Protein_1515 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14422.87 Da        Isoelectric Point: 10.2106

>NTDB_id=811009 P7F70_RS07970 WP_278023979.1 1581585..1581959(-) (comFC/cflB) [Streptococcus pluranimalium strain SP28]
MAWQFAEEIKQTLKLYKDFTVVPIPLSKKRMATRRFNQVEALLEAAETSYERILEKKDIDSQTTKTRQERLSSEQVFKIK
QDIKIPKKVLLVDDIYTTGQTIFLAKKALQDIGVKEIISFSLAR

Nucleotide


Download         Length: 375 bp        

>NTDB_id=811009 P7F70_RS07970 WP_278023979.1 1581585..1581959(-) (comFC/cflB) [Streptococcus pluranimalium strain SP28]
ATGGCGTGGCAATTTGCAGAGGAAATCAAACAAACATTAAAATTATACAAAGATTTTACAGTTGTTCCAATTCCCTTAAG
TAAGAAACGAATGGCAACCAGACGATTTAATCAAGTCGAAGCCCTACTGGAAGCAGCAGAGACTTCTTATGAAAGAATAC
TTGAAAAAAAGGATATTGATTCACAAACAACTAAAACTAGGCAGGAAAGATTAAGCTCAGAACAAGTTTTTAAAATAAAA
CAGGATATTAAAATACCGAAGAAAGTTCTTCTTGTAGATGACATCTATACTACAGGGCAAACCATATTTCTAGCAAAGAA
AGCCTTACAAGATATTGGCGTCAAAGAAATCATTAGTTTTAGTTTGGCAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(56-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae R6

50

96.774

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

50

96.774

0.484
  comFC/cflB Streptococcus pneumoniae D39

50

96.774

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

50

96.774

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

48.333

96.774

0.468
  comFC/cflB Streptococcus mitis SK321

48.333

96.774

0.468
  comFC Lactococcus lactis subsp. cremoris KW2

45.946

89.516

0.411