Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   P7F70_RS07975 Genome accession   NZ_CP121201
Coordinates   1582244..1583545 (-) Length   433 a.a.
NCBI ID   WP_278023980.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1577244..1588545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS07965 (P7F70_07970) raiA 1580956..1581504 (-) 549 WP_115130705.1 ribosome-associated translation inhibitor RaiA -
  P7F70_RS07970 (P7F70_07975) comFC/cflB 1581585..1581959 (-) 375 WP_278023979.1 phosphoribosyltransferase family protein Machinery gene
  P7F70_RS07975 (P7F70_07980) comFA/cflA 1582244..1583545 (-) 1302 WP_278023980.1 DEAD/DEAH box helicase Machinery gene
  P7F70_RS07980 (P7F70_07985) - 1583592..1584221 (+) 630 WP_278023981.1 YigZ family protein -
  P7F70_RS07985 (P7F70_07990) cysK 1584319..1585248 (+) 930 WP_278023982.1 cysteine synthase A -
  P7F70_RS07990 (P7F70_07995) tnpA 1585401..1585913 (-) 513 Protein_1515 IS200/IS605 family transposase -
  P7F70_RS07995 (P7F70_08000) - 1586142..1587490 (+) 1349 WP_278023983.1 IS3 family transposase -
  P7F70_RS08000 (P7F70_08005) - 1587547..1587906 (-) 360 WP_104968357.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49162.90 Da        Isoelectric Point: 9.2969

>NTDB_id=811010 P7F70_RS07975 WP_278023980.1 1582244..1583545(-) (comFA/cflA) [Streptococcus pluranimalium strain SP28]
MKTLKEKSGCWFAGSSITAEEREEAIKIPAFTQENGNLTCNRCSEKITTDWQLPDGTRYCRSCILLGRLTEDDYLYYFPP
KTFPKRNALQWKGKLTSYQKEISGSLVQSLEDRKDSLVHAVTGAGKTEMIYEVVAQVIDEGGQVCLASPRIDVCIELYKR
LSKDFSCDIDLLHGDSEPYSGSPLIIATTHQLLKFYHSFDLILVDEVDAFPYVDNKILYHAVRTAKKADGLTIYMTATST
EELDKQVKKGILKKRTLSRRFHGNPLIEPRNIWLTGLEKKVDSGKIPLKLKRYLDRQFQTGYPLLIFVPDIAFGKKIKKV
LCQHYPQVSIGFVSSNSPDRLEEVEMFRHGDLRVLISTTILERGVTFPKVDVFVLLAHHKLFTSSSLIQIGGRVGRSLER
PTGDLLFFHEGLTKAIKKTKKEIRQMNNLGGFK

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=811010 P7F70_RS07975 WP_278023980.1 1582244..1583545(-) (comFA/cflA) [Streptococcus pluranimalium strain SP28]
ATGAAAACGCTAAAAGAAAAAAGTGGTTGCTGGTTTGCAGGTTCTAGTATCACGGCAGAGGAAAGAGAAGAAGCCATAAA
GATACCTGCTTTCACTCAAGAAAATGGGAATCTTACTTGTAATAGATGTTCAGAAAAGATTACAACTGACTGGCAGTTGC
CGGATGGGACACGTTATTGTCGCTCCTGTATTTTATTAGGTAGATTGACGGAAGATGACTATCTCTATTATTTTCCACCG
AAAACTTTTCCAAAGAGAAATGCTTTACAATGGAAAGGCAAATTAACTAGTTATCAAAAAGAAATTTCAGGTAGTCTCGT
GCAATCACTTGAGGATAGAAAAGATAGTTTGGTACATGCCGTAACAGGAGCTGGAAAAACGGAAATGATCTATGAAGTAG
TCGCTCAAGTGATTGATGAAGGTGGACAAGTTTGTTTGGCCAGTCCTCGTATAGATGTTTGTATTGAATTATACAAGCGA
CTCAGCAAGGATTTTTCTTGTGATATTGATTTGTTACATGGTGATTCTGAACCATATAGTGGCTCCCCTTTGATTATTGC
AACTACCCATCAGCTGTTAAAGTTTTACCACTCTTTTGATCTTATATTAGTTGATGAAGTAGATGCCTTTCCCTACGTCG
ATAATAAGATACTTTATCATGCTGTTAGAACAGCGAAAAAAGCAGATGGTTTAACCATCTATATGACAGCAACTTCGACA
GAAGAATTAGATAAACAAGTCAAAAAAGGAATCTTAAAAAAACGAACTTTATCGCGAAGATTTCATGGGAATCCCTTAAT
AGAACCACGGAATATTTGGCTAACTGGACTAGAGAAAAAGGTTGACTCTGGTAAGATACCATTGAAACTGAAACGATATC
TAGATAGGCAATTTCAAACAGGCTACCCGCTTTTAATTTTTGTACCAGATATTGCTTTTGGAAAGAAAATAAAGAAAGTA
CTTTGTCAACACTATCCCCAAGTTTCTATAGGTTTTGTCTCTAGTAATAGTCCAGATAGATTAGAAGAAGTAGAAATGTT
CAGACATGGTGATTTAAGAGTTCTCATATCAACGACAATTTTAGAAAGAGGAGTGACATTTCCTAAAGTGGATGTCTTTG
TTTTACTAGCTCATCATAAATTATTTACTAGCTCTAGTCTTATTCAGATAGGTGGTCGAGTAGGACGGTCATTAGAGAGA
CCGACAGGAGATCTACTCTTCTTTCATGAAGGGCTTACAAAGGCTATCAAAAAGACTAAAAAAGAAATTCGACAGATGAA
CAATTTGGGAGGCTTCAAGTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-238)

Helicase conserved C-terminal domain (Helicase_C)

(297-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

58.565

99.769

0.584
  comFA/cflA Streptococcus pneumoniae D39

58.565

99.769

0.584
  comFA/cflA Streptococcus pneumoniae R6

58.565

99.769

0.584
  comFA/cflA Streptococcus pneumoniae TIGR4

58.565

99.769

0.584
  comFA/cflA Streptococcus mitis NCTC 12261

58.102

99.769

0.58
  comFA/cflA Streptococcus mitis SK321

57.407

99.769

0.573
  comFA Lactococcus lactis subsp. cremoris KW2

47.086

99.076

0.467
  comFA Bacillus subtilis subsp. subtilis str. 168

37.209

99.307

0.37
  comFA Latilactobacillus sakei subsp. sakei 23K

38.67

93.764

0.363