Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   P8R98_RS07075 Genome accession   NZ_CP121159
Coordinates   1409569..1410249 (+) Length   226 a.a.
NCBI ID   WP_000590620.1    Uniprot ID   A0AAV3JNX7
Organism   Streptococcus agalactiae strain S1     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404569..1415249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS07060 pstB 1405267..1406025 (+) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -
  P8R98_RS07065 phoU 1406059..1406712 (+) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  P8R98_RS07070 - 1406858..1409407 (+) 2550 WP_000859376.1 M1 family metallopeptidase -
  P8R98_RS07075 ciaR 1409569..1410249 (+) 681 WP_000590620.1 response regulator transcription factor Regulator
  P8R98_RS07080 ciaH 1410233..1411546 (+) 1314 WP_000042576.1 HAMP domain-containing sensor histidine kinase Regulator
  P8R98_RS07085 - 1411636..1411968 (+) 333 WP_000402075.1 putative DNA-binding protein -
  P8R98_RS07090 ffh 1411986..1413551 (+) 1566 WP_000863593.1 signal recognition particle protein -
  P8R98_RS07095 - 1413618..1414304 (+) 687 WP_278043410.1 SatD family protein -
  P8R98_RS07100 - 1414294..1415061 (+) 768 WP_278043411.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25852.63 Da        Isoelectric Point: 4.2507

>NTDB_id=810615 P8R98_RS07075 WP_000590620.1 1409569..1410249(+) (ciaR) [Streptococcus agalactiae strain S1]
MIKILLIEDDLSLSNSVFDFLDDFADVMQIFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGITTPVLIMTA
KESIDDKGQGFDLGADDYLTKPFYLEELKMRIQALLKRSGKFNDNSLIYGDIRVDMSTNSTFVNQTEVELLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKVRKKLKGTLFSENLQTLRSVGYILKHVETD

Nucleotide


Download         Length: 681 bp        

>NTDB_id=810615 P8R98_RS07075 WP_000590620.1 1409569..1410249(+) (ciaR) [Streptococcus agalactiae strain S1]
ATGATAAAAATTTTATTAATTGAAGATGACTTGAGCCTTTCCAATTCCGTTTTTGATTTCCTTGATGACTTTGCCGATGT
CATGCAAATTTTTGATGGAGAAGAGGGTCTTTACGAAGCCGAAAGTGGAGTCTATGATCTGATTCTTCTAGATCTCATGT
TACCTGAAAAAAACGGCTTCCAAGTGTTGAAAGAGCTACGTGAAAAAGGTATTACAACCCCTGTATTAATAATGACCGCT
AAAGAAAGCATTGATGATAAGGGACAAGGTTTCGACTTAGGTGCTGATGATTATCTAACAAAACCTTTTTACCTAGAAGA
ACTAAAAATGCGAATTCAGGCTCTTTTAAAGCGTTCTGGAAAATTTAATGATAACAGCCTAATTTATGGTGATATTCGCG
TAGACATGTCTACTAACTCAACCTTTGTTAATCAAACAGAAGTTGAGCTCTTAGGTAAAGAGTTTGATCTTTTAGTCTAT
TTCCTTCAAAATCAAAATGTTATCTTACCGAAATCTCAAATCTTTGATCGTATTTGGGGATTTGATAGTGATACAACGAT
TTCAGTTGTAGAAGTCTATGTCTCTAAGGTTCGGAAAAAATTAAAAGGAACACTTTTTTCAGAAAACCTTCAAACTTTGC
GTAGTGTAGGATATATTTTAAAGCATGTCGAAACCGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae TIGR4

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae D39

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae R6

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae Rx1

88.393

99.115

0.876
  ciaR Streptococcus mutans UA159

88.688

97.788

0.867
  vicR Streptococcus mutans UA159

35.193

100

0.363
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.607

99.115

0.363