Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   P8R98_RS07080 Genome accession   NZ_CP121159
Coordinates   1410233..1411546 (+) Length   437 a.a.
NCBI ID   WP_000042576.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1405233..1416546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS07060 pstB 1405267..1406025 (+) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -
  P8R98_RS07065 phoU 1406059..1406712 (+) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  P8R98_RS07070 - 1406858..1409407 (+) 2550 WP_000859376.1 M1 family metallopeptidase -
  P8R98_RS07075 ciaR 1409569..1410249 (+) 681 WP_000590620.1 response regulator transcription factor Regulator
  P8R98_RS07080 ciaH 1410233..1411546 (+) 1314 WP_000042576.1 HAMP domain-containing sensor histidine kinase Regulator
  P8R98_RS07085 - 1411636..1411968 (+) 333 WP_000402075.1 putative DNA-binding protein -
  P8R98_RS07090 ffh 1411986..1413551 (+) 1566 WP_000863593.1 signal recognition particle protein -
  P8R98_RS07095 - 1413618..1414304 (+) 687 WP_278043410.1 SatD family protein -
  P8R98_RS07100 - 1414294..1415061 (+) 768 WP_278043411.1 DUF3307 domain-containing protein -

Sequence


Protein


Download         Length: 437 a.a.        Molecular weight: 49678.12 Da        Isoelectric Point: 9.4961

>NTDB_id=810616 P8R98_RS07080 WP_000042576.1 1410233..1411546(+) (ciaH) [Streptococcus agalactiae strain S1]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYHAVTVKVNNPAYPNVT
YMTAIVNIDQLVNAKERYEKIIIFVMTTFWIISIGASIYLAKWAQKPIIENYERQKAFVENASHELRTPLAVLQNRLETL
FRKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLIAQENGKNFTGHNMIQD
SFKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGL
GLSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPKVKG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=810616 P8R98_RS07080 WP_000042576.1 1410233..1411546(+) (ciaH) [Streptococcus agalactiae strain S1]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGAAGTCAT
TAACTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTT
TAACCAACATTTTTGGTCAAGATGAGACATATCATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACT
TACATGACAGCTATTGTTAATATTGATCAATTAGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGAC
TACTTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGGCACAAAAACCGATTATAGAAAACTACGAAA
GACAGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTA
TTCAGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTAT
TTTAACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTT
TTGATAGTATCTTTGAGAATTATGATCTAATCGCCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATTCAAGAT
AGTTTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGA
TGGTAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAG
AGGAGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGATTTGGCCTC
GGCCTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTAT
TTTTAAGATAAAACTACCAAAAGTAAAAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

60.373

98.169

0.593

  ciaH Streptococcus pneumoniae Rx1

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae D39

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae R6

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae TIGR4

52.143

96.11

0.501