Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   RO838_RS10850 Genome accession   NZ_CP135134
Coordinates   2371763..2372197 (+) Length   144 a.a.
NCBI ID   WP_004084597.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8478     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2366763..2377197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO838_RS10820 (RO838_10820) coaE 2366862..2367485 (-) 624 WP_020851236.1 dephospho-CoA kinase -
  RO838_RS10825 (RO838_10825) pilD 2367497..2368360 (-) 864 WP_004084594.1 A24 family peptidase Machinery gene
  RO838_RS10830 (RO838_10830) pilC 2368367..2369569 (-) 1203 WP_010894959.1 type II secretion system F family protein Machinery gene
  RO838_RS10835 (RO838_10835) pilA 2370010..2370456 (+) 447 WP_057682388.1 pilin Machinery gene
  RO838_RS10840 (RO838_10840) - 2370702..2370929 (-) 228 WP_057682387.1 hypothetical protein -
  RO838_RS10845 (RO838_10845) - 2371317..2371619 (-) 303 WP_128734940.1 hypothetical protein -
  RO838_RS10850 (RO838_10850) pilA/pilAI 2371763..2372197 (+) 435 WP_004084597.1 pilin Machinery gene
  RO838_RS10855 (RO838_10855) pilB 2373037..2374770 (+) 1734 WP_057682386.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RO838_RS10860 (RO838_10860) - 2374864..2376276 (-) 1413 WP_057682385.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14980.38 Da        Isoelectric Point: 8.5024

>NTDB_id=810208 RO838_RS10850 WP_004084597.1 2371763..2372197(+) (pilA/pilAI) [Xylella fastidiosa strain CFBP8478]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVTAGLAEITPSKAQAEIRIAEARPTTVSTDIGLRTPTARCAV
AVDIKTDAESTITCTLIGNTQVNGQTIKLSRAVDNAAGTGGLWTCTTTVAEALAPGGCTSTKKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=810208 RO838_RS10850 WP_004084597.1 2371763..2372197(+) (pilA/pilAI) [Xylella fastidiosa strain CFBP8478]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCAGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGACCAACAACTGTTTCGACCGATATCGGACTGCGCACCCCAACGGCTCGTTGCGCCGTT
GCTGTCGACATCAAGACCGATGCTGAAAGCACAATTACATGTACGCTTATTGGTAATACCCAAGTCAACGGTCAAACCAT
TAAGTTGAGTCGCGCCGTCGATAACGCCGCAGGCACAGGGGGTCTGTGGACCTGTACCACAACCGTTGCCGAAGCGTTGG
CACCAGGAGGCTGCACTTCGACCAAGAAGAGCTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

47.183

98.611

0.465
  pilA/pilAII Pseudomonas stutzeri DSM 10701

47.143

97.222

0.458
  pilA Pseudomonas aeruginosa PAK

41.026

100

0.444
  pilA Acinetobacter baumannii strain A118

44.444

100

0.444
  pilA Vibrio cholerae strain A1552

39.49

100

0.431
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.49

100

0.431
  pilA Vibrio cholerae C6706

39.49

100

0.431
  pilA Vibrio parahaemolyticus RIMD 2210633

42.143

97.222

0.41
  pilA Ralstonia pseudosolanacearum GMI1000

37.179

100

0.403
  comP Acinetobacter baylyi ADP1

35.714

100

0.382