Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P6F23_RS02135 Genome accession   NZ_CP120953
Coordinates   380603..381328 (+) Length   241 a.a.
NCBI ID   WP_000912314.1    Uniprot ID   A0AAW6XYE4
Organism   Streptococcus agalactiae strain GBSIR0001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 375603..386328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6F23_RS02100 (P6F23_02100) tsaE 376405..376848 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  P6F23_RS02105 (P6F23_02105) - 376841..377362 (+) 522 WP_000043149.1 GNAT family N-acetyltransferase -
  P6F23_RS02110 (P6F23_02110) - 377371..378678 (+) 1308 WP_000708161.1 LCP family protein -
  P6F23_RS02115 (P6F23_02115) - 378742..379038 (-) 297 WP_000690175.1 hypothetical protein -
  P6F23_RS02120 (P6F23_02120) - 379035..379454 (-) 420 WP_000368099.1 HIT family protein -
  P6F23_RS02125 (P6F23_02125) - 379790..380293 (+) 504 WP_000773458.1 hypothetical protein -
  P6F23_RS02130 (P6F23_02130) - 380345..380531 (-) 187 Protein_347 hypothetical protein -
  P6F23_RS02135 (P6F23_02135) pptA 380603..381328 (+) 726 WP_000912314.1 ABC transporter ATP-binding protein Regulator
  P6F23_RS02140 (P6F23_02140) - 381330..382364 (+) 1035 WP_000732715.1 ABC transporter permease -
  P6F23_RS02145 (P6F23_02145) - 382422..383222 (+) 801 WP_000155919.1 cell cycle regulator CcrZ -
  P6F23_RS02150 (P6F23_02150) trmB 383212..383847 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  P6F23_RS02160 (P6F23_02160) rimP 384336..384812 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  P6F23_RS02165 (P6F23_02165) nusA 384848..385999 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  P6F23_RS02170 (P6F23_02170) - 386021..386317 (+) 297 WP_001140526.1 YlxR family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26834.27 Da        Isoelectric Point: 4.6310

>NTDB_id=809545 P6F23_RS02135 WP_000912314.1 380603..381328(+) (pptA) [Streptococcus agalactiae strain GBSIR0001]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEANQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=809545 P6F23_RS02135 WP_000912314.1 380603..381328(+) (pptA) [Streptococcus agalactiae strain GBSIR0001]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACCATTGATGGCATTAGTCTTGAAGCCAACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAGACACCAAGTCTCTATGAGGAACTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.406

99.17

0.768
  pptA Streptococcus salivarius strain HSISS4

76.987

99.17

0.763