Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   P2A85_RS03785 Genome accession   NZ_CP120853
Coordinates   891193..891558 (-) Length   121 a.a.
NCBI ID   WP_371124039.1    Uniprot ID   -
Organism   MAG: Microcoleus anatoxicus isolate Neu2020_A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 886193..896558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2A85_RS03780 (P2A85_03770) - 890544..891044 (-) 501 WP_377477626.1 chemotaxis protein CheW -
  P2A85_RS03785 (P2A85_03775) pilH 891193..891558 (-) 366 WP_371124039.1 response regulator transcription factor Machinery gene
  P2A85_RS03790 (P2A85_03780) - 892070..892798 (+) 729 WP_377481284.1 phosphoadenylyl-sulfate reductase -
  P2A85_RS03795 (P2A85_03785) - 892920..893093 (-) 174 WP_377477628.1 hypothetical protein -
  P2A85_RS03800 (P2A85_03790) leuS 893256..896021 (+) 2766 WP_377477630.1 leucine--tRNA ligase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13516.74 Da        Isoelectric Point: 4.7381

>NTDB_id=808910 P2A85_RS03785 WP_371124039.1 891193..891558(-) (pilH) [MAG: Microcoleus anatoxicus isolate Neu2020_A]
MSKILVVDDVPSELEIICRILQDVGLEVIRAGDGAEAIARIQEKAPDLVVLDVVMPRMNGFEVIRELRGDRKTAYLPVVF
CTHKNTEIDKAWGTDLGADAYLSKPFEPQQLVNIVQRLLSK

Nucleotide


Download         Length: 366 bp        

>NTDB_id=808910 P2A85_RS03785 WP_371124039.1 891193..891558(-) (pilH) [MAG: Microcoleus anatoxicus isolate Neu2020_A]
ATGTCAAAAATCTTAGTAGTAGACGATGTTCCCAGCGAACTAGAAATCATCTGTCGCATTCTTCAAGATGTGGGACTGGA
AGTGATCCGGGCGGGAGATGGCGCAGAAGCGATCGCCCGTATCCAAGAAAAAGCGCCGGATCTGGTCGTTTTAGATGTAG
TAATGCCACGAATGAACGGATTTGAGGTGATTCGAGAATTGCGGGGCGATCGCAAAACCGCATATTTGCCCGTAGTATTT
TGTACTCATAAAAACACCGAGATCGATAAAGCTTGGGGAACTGATTTAGGGGCAGATGCTTACCTCAGCAAACCCTTTGA
ACCTCAGCAACTTGTCAACATTGTACAGCGTTTGCTATCAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

49.58

98.347

0.488
  ciaR Streptococcus mutans UA159

38.017

100

0.38
  vicR Streptococcus mutans UA159

38.017

100

0.38
  ciaR Streptococcus pneumoniae D39

37.19

100

0.372
  ciaR Streptococcus pneumoniae R6

37.19

100

0.372
  ciaR Streptococcus pneumoniae TIGR4

37.19

100

0.372
  micA Streptococcus pneumoniae Cp1015

37.19

100

0.372
  ciaR Streptococcus pneumoniae Rx1

37.19

100

0.372