Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RMQ63_RS00540 Genome accession   NZ_CP135063
Coordinates   111675..113444 (-) Length   589 a.a.
NCBI ID   WP_313680939.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 106675..118444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS00520 (RMQ63_00520) murB 107398..108306 (-) 909 WP_105183835.1 UDP-N-acetylmuramate dehydrogenase -
  RMQ63_RS00525 (RMQ63_00525) thrB 108437..109297 (-) 861 WP_313680936.1 homoserine kinase -
  RMQ63_RS00530 (RMQ63_00530) - 109301..110587 (-) 1287 WP_313680937.1 homoserine dehydrogenase -
  RMQ63_RS00535 (RMQ63_00535) - 110692..111615 (+) 924 WP_313680938.1 polysaccharide deacetylase family protein -
  RMQ63_RS00540 (RMQ63_00540) rcrQ 111675..113444 (-) 1770 WP_313680939.1 ABC transporter ATP-binding protein Regulator
  RMQ63_RS00545 (RMQ63_00545) rcrP 113453..115189 (-) 1737 WP_109371466.1 ABC transporter ATP-binding protein Regulator
  RMQ63_RS00550 (RMQ63_00550) - 115265..115507 (-) 243 WP_012028079.1 KH domain-containing protein -
  RMQ63_RS00555 (RMQ63_00555) rpsP 115529..115801 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RMQ63_RS00560 (RMQ63_00560) - 115926..116234 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  RMQ63_RS00565 (RMQ63_00565) pcp 116234..116881 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  RMQ63_RS00570 (RMQ63_00570) - 116878..117639 (-) 762 WP_024384449.1 class I SAM-dependent methyltransferase -
  RMQ63_RS00575 (RMQ63_00575) - 117710..118024 (-) 315 WP_024384448.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65791.84 Da        Isoelectric Point: 5.2752

>NTDB_id=808370 RMQ63_RS00540 WP_313680939.1 111675..113444(-) (rcrQ) [Streptococcus suis strain ID32563]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVEGAQINYSYIAIMLAIYALR
ALMYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDADALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIREISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=808370 RMQ63_RS00540 WP_313680939.1 111675..113444(-) (rcrQ) [Streptococcus suis strain ID32563]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTTCTGGGGCTTATCATCACAGAATTGACTAAGAATTTAT
TGGACATGGCAAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCTATCTATGCCCTGCGC
GCTCTGATGTATGAAATCGGTGCCTATGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACCAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCTGTTTCTTATTTTGACAAGCATCAATATGGTGATTTGCTGGGTCGAT
TTACAAGTGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGCTTTCTCCAGCTAGTCAATGCCGTTCTGACTCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACTTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAACCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCAGGTACATTGACAGTTGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCGATGCGCTAGAGTTGACAGCTAGTTTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTAGAGAGATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCCTGGCTCTACGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAAGCTGCCAAAGCCGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCCATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCCCACCGTTTATCAACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.22

100

0.433