Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RMQ63_RS00220 Genome accession   NZ_CP135063
Coordinates   42170..42835 (+) Length   221 a.a.
NCBI ID   WP_313680908.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 37170..47835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS00195 (RMQ63_00195) - 37494..38660 (+) 1167 WP_313680904.1 carbamoyl phosphate synthase large subunit -
  RMQ63_RS00200 (RMQ63_00200) - 38800..38940 (+) 141 WP_313680905.1 hypothetical protein -
  RMQ63_RS00205 (RMQ63_00205) - 38953..39342 (+) 390 WP_313680906.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  RMQ63_RS00210 (RMQ63_00210) - 39351..40103 (+) 753 WP_024385226.1 ABC transporter ATP-binding protein -
  RMQ63_RS00215 (RMQ63_00215) - 40104..42074 (+) 1971 WP_313680907.1 FtsX-like permease family protein -
  RMQ63_RS00220 (RMQ63_00220) braR 42170..42835 (+) 666 WP_313680908.1 response regulator transcription factor Regulator
  RMQ63_RS00225 (RMQ63_00225) - 42832..43773 (+) 942 WP_313680909.1 sensor histidine kinase -
  RMQ63_RS00230 (RMQ63_00230) - 43848..45356 (+) 1509 WP_313680910.1 phosphomannomutase/phosphoglucomutase -
  RMQ63_RS00235 (RMQ63_00235) xerS 45697..46767 (-) 1071 WP_029171773.1 tyrosine recombinase XerS Machinery gene
  RMQ63_RS00240 (RMQ63_00240) - 46916..47437 (-) 522 WP_029171774.1 AAA family ATPase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25411.09 Da        Isoelectric Point: 4.8695

>NTDB_id=808367 RMQ63_RS00220 WP_313680908.1 42170..42835(+) (braR) [Streptococcus suis strain ID32563]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAISQEVAEHKPDLVLMDISLPYYNGFYWTTEIRKTLTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNESDQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEDFIDQNTLNVNMTRLRKKVSEVGFDRIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=808367 RMQ63_RS00220 WP_313680908.1 42170..42835(+) (braR) [Streptococcus suis strain ID32563]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAACTCTTGAAGCAACATTTGGGCAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTATCAGTCAGGAGGTTGCGGAACACAAACCAGACTTAGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGCTTTTACTGGACGACAGAAATCCGTAAAACCCTGACCATGCCCATTATCTTCATCTCC
TCTAGCGACGATGAGATGAATGCAGTTATGGCTATGAACATGGGTGGAGATGATTTTGTGTCCAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGTGCCTTTCTGCGTCGGGTTAATCAATTTAGCAAATCAACTGACTTGTCTATCGACCAAT
TCCAGCTTAGTTTGGACGGGCGATTTTCAAACGAATCGGACCAGGTTCAATTATCTCCAACAGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGATTTTATTGA
CCAGAATACGCTCAATGTAAACATGACTCGTCTGCGTAAGAAGGTAAGTGAAGTTGGTTTTGACCGTATTCATACTGTTC
GTGGCGTGGGGTACCTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.636

99.548

0.484