Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P6988_RS14540 Genome accession   NZ_CP120719
Coordinates   3100696..3100995 (-) Length   99 a.a.
NCBI ID   WP_277684239.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3095696..3105995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS14515 (P6988_14515) lapB 3095994..3097163 (-) 1170 WP_171348211.1 lipopolysaccharide assembly protein LapB -
  P6988_RS14520 (P6988_14520) - 3097189..3097470 (-) 282 WP_021457153.1 LapA family protein -
  P6988_RS14525 (P6988_14525) ihfB 3097609..3097890 (-) 282 WP_006959336.1 integration host factor subunit beta -
  P6988_RS14530 (P6988_14530) rpsA 3098101..3099771 (-) 1671 WP_006959338.1 30S ribosomal protein S1 -
  P6988_RS14535 (P6988_14535) cmk 3099875..3100555 (-) 681 WP_277684238.1 (d)CMP kinase -
  P6988_RS14540 (P6988_14540) comEA 3100696..3100995 (-) 300 WP_277684239.1 helix-hairpin-helix domain-containing protein Machinery gene
  P6988_RS14545 (P6988_14545) ppiD 3101135..3102994 (-) 1860 WP_277684240.1 peptidylprolyl isomerase -
  P6988_RS14550 (P6988_14550) - 3103168..3103440 (-) 273 WP_004414742.1 HU family DNA-binding protein -
  P6988_RS14555 (P6988_14555) lon 3103633..3105984 (-) 2352 WP_021457152.1 endopeptidase La -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10600.44 Da        Isoelectric Point: 6.2913

>NTDB_id=808315 P6988_RS14540 WP_277684239.1 3100696..3100995(-) (comEA) [Vibrio coralliilyticus strain Rb102]
MLRILWTSLLMVLAVYSPTIVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLA
LVKGIGPALIDKNLSRIKL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=808315 P6988_RS14540 WP_277684239.1 3100696..3100995(-) (comEA) [Vibrio coralliilyticus strain Rb102]
ATGCTACGCATACTTTGGACGAGTCTTTTAATGGTGCTCGCGGTATATAGCCCAACTATTGTATCGGCTGAAAAAACCAC
CAACTCAGAATACGCTGGAATAGAGATTACAGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTG
GTGTTGGTGCGAAAAAAGCTGAGGCTATTGTTCAATATAGGGACGAAAACGGCCCTTTTTTGAAGGTGACTGATTTGGCT
TTGGTTAAAGGTATTGGCCCCGCTTTAATAGACAAAAACCTCAGTCGTATAAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

52.747

91.919

0.485
  comEA Vibrio campbellii strain DS40M4

51.648

91.919

0.475
  comEA Vibrio cholerae C6706

53.571

84.848

0.455
  comEA Vibrio cholerae strain A1552

53.571

84.848

0.455
  comE1/comEA Haemophilus influenzae Rd KW20

39.091

100

0.434
  comEA/comE1 Glaesserella parasuis strain SC1401

37.736

100

0.404