Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   RLE12_RS26365 Genome accession   NZ_CP134695
Coordinates   5605012..5605476 (-) Length   154 a.a.
NCBI ID   WP_021205141.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJM4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5600012..5610476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLE12_RS26350 nadC 5602522..5603370 (+) 849 WP_003161760.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RLE12_RS26360 - 5603551..5604930 (-) 1380 WP_223719891.1 O-antigen ligase -
  RLE12_RS26365 pilA/pilAI 5605012..5605476 (-) 465 WP_021205141.1 pilin Machinery gene
  RLE12_RS26370 pilB 5605707..5607407 (+) 1701 WP_021205142.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RLE12_RS26375 pilC 5607411..5608628 (+) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  RLE12_RS26380 pilD 5608629..5609501 (+) 873 WP_003107301.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  RLE12_RS26385 coaE 5609498..5610109 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  RLE12_RS26390 yacG 5610106..5610306 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16076.44 Da        Isoelectric Point: 9.0145

>NTDB_id=807457 RLE12_RS26365 WP_021205141.1 5605012..5605476(-) (pilA/pilAI) [Pseudomonas aeruginosa strain TJM4]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSKTPTKDQYDIGFTG
STLLKGSEKGQITVKNGTLPTVQLEATLDGSSGAAIKGAVITVSRTADGVWGCSISSTPANWKPNYAPSNCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=807457 RLE12_RS26365 WP_021205141.1 5605012..5605476(-) (pilA/pilAI) [Pseudomonas aeruginosa strain TJM4]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCTGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAAGAAATTGTTTCCAGTAAGACTCCTACCAAGGACCAATATGATATTGGATTTACCGGT
TCTACCTTGCTGAAAGGGTCGGAGAAAGGTCAGATTACTGTGAAAAATGGTACTCTGCCTACTGTGCAGTTGGAAGCTAC
TCTGGATGGTTCTTCCGGTGCCGCTATTAAAGGTGCAGTTATTACCGTTTCGCGTACCGCTGATGGGGTGTGGGGTTGCT
CGATCAGTAGCACTCCTGCTAACTGGAAACCAAACTATGCCCCCTCTAACTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

47.945

94.805

0.455
  pilA Pseudomonas aeruginosa PAK

42.857

100

0.448
  pilA Acinetobacter baumannii strain A118

45.205

94.805

0.429
  comP Acinetobacter baylyi ADP1

39.264

100

0.416
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.776

95.455

0.37
  pilA Vibrio parahaemolyticus RIMD 2210633

41.007

90.26

0.37