Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P5647_RS12370 Genome accession   NZ_CP120622
Coordinates   2413556..2413852 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain DSM 1090     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2408556..2418852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS12325 (P5647_12325) tasA 2408964..2409749 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  P5647_RS12330 (P5647_12330) sipW 2409813..2410385 (-) 573 WP_003246088.1 signal peptidase I SipW -
  P5647_RS12335 (P5647_12335) tapA 2410369..2411130 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  P5647_RS12340 (P5647_12340) yqzG 2411402..2411728 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  P5647_RS12345 (P5647_12345) spoIITA 2411770..2411949 (-) 180 WP_003230176.1 YqzE family protein -
  P5647_RS12350 (P5647_12350) comGG 2412020..2412394 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  P5647_RS12355 (P5647_12355) comGF 2412395..2412778 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  P5647_RS12360 (P5647_12360) comGE 2412804..2413151 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  P5647_RS12365 (P5647_12365) comGD 2413135..2413566 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  P5647_RS12370 (P5647_12370) comGC 2413556..2413852 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  P5647_RS12375 (P5647_12375) comGB 2413866..2414904 (-) 1039 Protein_2396 comG operon protein ComGB -
  P5647_RS12380 (P5647_12380) comGA 2414891..2415961 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  P5647_RS12385 (P5647_12385) corA 2416373..2417326 (-) 954 WP_004399136.1 magnesium transporter CorA -
  P5647_RS12390 (P5647_12390) yqhB 2417469..2418797 (+) 1329 WP_009967730.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=807140 P5647_RS12370 WP_003230162.1 2413556..2413852(-) (comGC) [Bacillus subtilis strain DSM 1090]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=807140 P5647_RS12370 WP_003230162.1 2413556..2413852(-) (comGC) [Bacillus subtilis strain DSM 1090]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378