Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P5647_RS12365 Genome accession   NZ_CP120622
Coordinates   2413135..2413566 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 1090     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2408135..2418566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS12315 (P5647_12315) sinI 2408329..2408502 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  P5647_RS12320 (P5647_12320) sinR 2408536..2408871 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  P5647_RS12325 (P5647_12325) tasA 2408964..2409749 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  P5647_RS12330 (P5647_12330) sipW 2409813..2410385 (-) 573 WP_003246088.1 signal peptidase I SipW -
  P5647_RS12335 (P5647_12335) tapA 2410369..2411130 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  P5647_RS12340 (P5647_12340) yqzG 2411402..2411728 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  P5647_RS12345 (P5647_12345) spoIITA 2411770..2411949 (-) 180 WP_003230176.1 YqzE family protein -
  P5647_RS12350 (P5647_12350) comGG 2412020..2412394 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  P5647_RS12355 (P5647_12355) comGF 2412395..2412778 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  P5647_RS12360 (P5647_12360) comGE 2412804..2413151 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  P5647_RS12365 (P5647_12365) comGD 2413135..2413566 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  P5647_RS12370 (P5647_12370) comGC 2413556..2413852 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  P5647_RS12375 (P5647_12375) comGB 2413866..2414904 (-) 1039 Protein_2396 comG operon protein ComGB -
  P5647_RS12380 (P5647_12380) comGA 2414891..2415961 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  P5647_RS12385 (P5647_12385) corA 2416373..2417326 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=807139 P5647_RS12365 WP_004398628.1 2413135..2413566(-) (comGD) [Bacillus subtilis strain DSM 1090]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=807139 P5647_RS12365 WP_004398628.1 2413135..2413566(-) (comGD) [Bacillus subtilis strain DSM 1090]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1