Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5637_RS13310 Genome accession   NZ_CP120601
Coordinates   2555846..2556484 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain PRO109     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2550846..2561484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS13275 (P5637_13275) - 2552036..2552467 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  P5637_RS13280 (P5637_13280) - 2552467..2552808 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  P5637_RS13285 (P5637_13285) - 2552801..2554279 (+) 1479 WP_025809735.1 Na+/H+ antiporter subunit D -
  P5637_RS13290 (P5637_13290) - 2554285..2554761 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  P5637_RS13295 (P5637_13295) - 2554761..2555045 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  P5637_RS13300 (P5637_13300) mnhG 2555029..2555403 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  P5637_RS13305 (P5637_13305) - 2555440..2555829 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  P5637_RS13310 (P5637_13310) comA 2555846..2556484 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  P5637_RS13315 (P5637_13315) comP 2556571..2558886 (-) 2316 WP_020452789.1 ATP-binding protein Regulator
  P5637_RS13320 (P5637_13320) comX 2558907..2559077 (-) 171 WP_020452790.1 competence pheromone ComX -
  P5637_RS13325 (P5637_13325) - 2559049..2559960 (-) 912 WP_020452791.1 polyprenyl synthetase family protein -
  P5637_RS13330 (P5637_13330) degQ 2560147..2560287 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  P5637_RS13335 (P5637_13335) - 2560899..2561120 (+) 222 WP_230368259.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=806658 P5637_RS13310 WP_003184849.1 2555846..2556484(-) (comA) [Bacillus paralicheniformis strain PRO109]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=806658 P5637_RS13310 WP_003184849.1 2555846..2556484(-) (comA) [Bacillus paralicheniformis strain PRO109]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATAACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778