Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ58_RS01240 Genome accession   NZ_CP134579
Coordinates   69072..70337 (+) Length   421 a.a.
NCBI ID   WP_108564114.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 64072..75337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS01210 (RKQ58_01210) mutY 64239..65273 (-) 1035 WP_005134462.1 A/G-specific adenine glycosylase -
  RKQ58_RS01215 (RKQ58_01215) - 65414..65776 (-) 363 WP_000130110.1 HIT family protein -
  RKQ58_RS01220 (RKQ58_01220) - 65964..66701 (-) 738 WP_000100774.1 dienelactone hydrolase family protein -
  RKQ58_RS01225 (RKQ58_01225) - 66873..67031 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ58_RS01230 (RKQ58_01230) - 67226..67684 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  RKQ58_RS01235 (RKQ58_01235) - 67794..68966 (+) 1173 WP_005134467.1 PQQ-dependent sugar dehydrogenase -
  RKQ58_RS01240 (RKQ58_01240) rarA 69072..70337 (+) 1266 WP_108564114.1 replication-associated recombination protein A Machinery gene
  RKQ58_RS01245 (RKQ58_01245) - 70353..71192 (-) 840 WP_000349494.1 formate/nitrite transporter family protein -
  RKQ58_RS01250 (RKQ58_01250) - 71478..71681 (-) 204 WP_000418560.1 hypothetical protein -
  RKQ58_RS01255 (RKQ58_01255) purC 71874..72593 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ58_RS01260 (RKQ58_01260) - 72630..73232 (-) 603 WP_001177091.1 hypothetical protein -
  RKQ58_RS01265 (RKQ58_01265) dapA 73248..74141 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RKQ58_RS01270 (RKQ58_01270) pncA 74471..75115 (+) 645 WP_005134470.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46944.66 Da        Isoelectric Point: 6.1908

>NTDB_id=805836 RKQ58_RS01240 WP_108564114.1 69072..70337(+) (rarA) [Acinetobacter baumannii strain XH1034]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAKSGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=805836 RKQ58_RS01240 WP_108564114.1 69072..70337(+) (rarA) [Acinetobacter baumannii strain XH1034]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAGGTGATTGCAAAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375