Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RJW56_RS02620 Genome accession   NZ_CP134472
Coordinates   517180..518136 (+) Length   318 a.a.
NCBI ID   WP_311064053.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 512180..523136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS02580 (RJW56_02580) - 512671..513261 (-) 591 WP_002935109.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  RJW56_RS02585 (RJW56_02585) - 513544..513702 (+) 159 Protein_461 putative cross-wall-targeting lipoprotein signal domain-containing proteiin -
  RJW56_RS02590 (RJW56_02590) - 513893..514105 (+) 213 WP_248032807.1 hypothetical protein -
  RJW56_RS02595 (RJW56_02595) - 514159..514920 (+) 762 WP_311064329.1 glycosyltransferase -
  RJW56_RS02600 (RJW56_02600) - 515281..515463 (+) 183 WP_311064331.1 DUF3884 family protein -
  RJW56_RS02605 (RJW56_02605) - 515595..515786 (+) 192 WP_002935101.1 hypothetical protein -
  RJW56_RS02610 (RJW56_02610) comA 515989..516708 (+) 720 WP_311064050.1 cysteine peptidase family C39 domain-containing protein Regulator
  RJW56_RS10920 - 516708..517094 (+) 387 Protein_467 ABC transporter transmembrane domain-containing protein -
  RJW56_RS02620 (RJW56_02620) comA 517180..518136 (+) 957 WP_311064053.1 ATP-binding cassette domain-containing protein Regulator
  RJW56_RS02625 (RJW56_02625) - 518158..518325 (+) 168 WP_311064055.1 bacteriocin-type signal sequence -
  RJW56_RS02630 (RJW56_02630) - 518773..519642 (+) 870 WP_226313481.1 GHKL domain-containing protein -
  RJW56_RS02635 (RJW56_02635) - 519657..519857 (+) 201 WP_311064058.1 hypothetical protein -
  RJW56_RS02640 (RJW56_02640) - 519935..520405 (+) 471 WP_311064060.1 DNA-binding response regulator -
  RJW56_RS02645 (RJW56_02645) - 520983..521618 (+) 636 WP_024394859.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35805.40 Da        Isoelectric Point: 4.6087

>NTDB_id=803697 RJW56_RS02620 WP_311064053.1 517180..518136(+) (comA) [Streptococcus suis strain 1522228]
MLFNVLILWQGAILVIEGKISLGSLITFNTLELYFLNSLENIINLQPKFQSASVAYNRLEEIYSVQSEFQDKFFITNFKL
NSSKIVISNLTYKYGYNQPLLKDINLVIEEGCKIAFVGLSGSGKTTLAKMLVNFMPPTYGSIEFGGININDIDKKTLRQL
INYIPQKPYIFNGTILDNLLLGVEDEISFEEINKATEIAEIKSVIENLPLGYETELSPEHSILSGGQLQRVAIARALLTN
PSVLILDESTSNLDNLTERKIIDNLMSLDTTVIFIAHRLNITEQVERIFVIENGMIIENGNHEDLILKQGFYSKILKG

Nucleotide


Download         Length: 957 bp        

>NTDB_id=803697 RJW56_RS02620 WP_311064053.1 517180..518136(+) (comA) [Streptococcus suis strain 1522228]
TTGTTGTTTAATGTATTAATTTTATGGCAAGGTGCTATTTTAGTAATTGAAGGAAAAATATCATTGGGATCTTTGATAAC
CTTTAATACTTTAGAACTTTATTTTCTGAATTCACTGGAGAACATTATTAATTTACAACCTAAATTTCAATCAGCAAGTG
TTGCGTATAATAGATTAGAAGAAATCTATTCGGTTCAATCAGAATTTCAGGATAAGTTCTTCATAACAAATTTTAAATTG
AATTCTAGTAAGATAGTAATTTCAAATTTAACCTACAAATATGGCTATAACCAGCCTCTATTAAAAGATATTAATTTAGT
TATCGAGGAAGGTTGTAAAATAGCATTTGTTGGTCTTTCTGGTTCAGGGAAAACAACTCTAGCAAAAATGTTAGTTAATT
TTATGCCTCCTACCTATGGAAGTATTGAATTTGGAGGAATTAATATTAATGATATTGATAAGAAGACTTTGAGACAATTG
ATTAATTATATACCCCAGAAACCTTATATTTTTAACGGTACTATATTAGATAATCTTTTATTAGGTGTTGAAGATGAAAT
TTCATTTGAAGAGATTAATAAAGCTACTGAGATTGCCGAGATAAAATCTGTTATAGAGAATTTACCGTTAGGATATGAGA
CCGAACTTTCCCCTGAACATAGCATTTTGTCAGGAGGTCAACTTCAGAGAGTTGCTATTGCACGTGCATTATTAACCAAT
CCCTCGGTATTAATCTTAGATGAGTCAACAAGTAATTTGGATAATTTAACGGAAAGAAAAATTATTGATAATTTAATGAG
CTTAGATACAACTGTAATATTTATTGCTCACCGTCTTAATATAACAGAACAGGTTGAAAGGATATTTGTCATAGAAAATG
GTATGATAATCGAAAACGGAAATCATGAAGATTTGATATTAAAACAAGGGTTTTATTCTAAAATATTAAAAGGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(101-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

57.911

99.371

0.575
  comA Streptococcus mitis SK321

56.962

99.371

0.566
  comA Streptococcus pneumoniae D39

56.646

99.371

0.563
  comA Streptococcus pneumoniae R6

56.646

99.371

0.563
  comA Streptococcus pneumoniae Rx1

56.646

99.371

0.563
  comA Streptococcus gordonii str. Challis substr. CH1

56.646

99.371

0.563
  comA Streptococcus pneumoniae TIGR4

56.013

99.371

0.557
  comA/nlmT Streptococcus mutans UA159

52.396

98.428

0.516