Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RJW56_RS02610 Genome accession   NZ_CP134472
Coordinates   515989..516708 (+) Length   239 a.a.
NCBI ID   WP_311064050.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 510989..521708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS02575 (RJW56_02575) - 511829..512674 (-) 846 WP_024394846.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  RJW56_RS02580 (RJW56_02580) - 512671..513261 (-) 591 WP_002935109.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  RJW56_RS02585 (RJW56_02585) - 513544..513702 (+) 159 Protein_461 putative cross-wall-targeting lipoprotein signal domain-containing proteiin -
  RJW56_RS02590 (RJW56_02590) - 513893..514105 (+) 213 WP_248032807.1 hypothetical protein -
  RJW56_RS02595 (RJW56_02595) - 514159..514920 (+) 762 WP_311064329.1 glycosyltransferase -
  RJW56_RS02600 (RJW56_02600) - 515281..515463 (+) 183 WP_311064331.1 DUF3884 family protein -
  RJW56_RS02605 (RJW56_02605) - 515595..515786 (+) 192 WP_002935101.1 hypothetical protein -
  RJW56_RS02610 (RJW56_02610) comA 515989..516708 (+) 720 WP_311064050.1 cysteine peptidase family C39 domain-containing protein Regulator
  RJW56_RS10920 - 516708..517094 (+) 387 Protein_467 ABC transporter transmembrane domain-containing protein -
  RJW56_RS02620 (RJW56_02620) comA 517180..518136 (+) 957 WP_311064053.1 ATP-binding cassette domain-containing protein Regulator
  RJW56_RS02625 (RJW56_02625) - 518158..518325 (+) 168 WP_311064055.1 bacteriocin-type signal sequence -
  RJW56_RS02630 (RJW56_02630) - 518773..519642 (+) 870 WP_226313481.1 GHKL domain-containing protein -
  RJW56_RS02635 (RJW56_02635) - 519657..519857 (+) 201 WP_311064058.1 hypothetical protein -
  RJW56_RS02640 (RJW56_02640) - 519935..520405 (+) 471 WP_311064060.1 DNA-binding response regulator -
  RJW56_RS02645 (RJW56_02645) - 520983..521618 (+) 636 WP_024394859.1 hypothetical protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27722.54 Da        Isoelectric Point: 9.5806

>NTDB_id=803696 RJW56_RS02610 WP_311064050.1 515989..516708(+) (comA) [Streptococcus suis strain 1522228]
MKFSKRHYRAQVDSKDCGVAALAMVLEYYNSHYSLAELREMLGTTENGTTAFSIVSVANELGFDTEAIYADISLFDIEDI
KFPFIVHINKNNKFYHYYVIIGSDKKYIYIADPDPLIKLSKLTKEQFLAEWRGITILLKPNHEYKIKRKKTSFPSLFTLL
FNQKKLIFLIILLTLAVNFINIIGSYYLKRVIDSYIPKGELDFLNLMSISLIVIYLMQQFLYLVKGIDNSSKSNTFKKI

Nucleotide


Download         Length: 720 bp        

>NTDB_id=803696 RJW56_RS02610 WP_311064050.1 515989..516708(+) (comA) [Streptococcus suis strain 1522228]
ATGAAATTTTCGAAACGTCATTATCGTGCTCAAGTTGATTCAAAAGATTGTGGAGTAGCTGCTTTGGCCATGGTGTTAGA
ATACTATAATTCACATTATTCTTTAGCAGAACTTAGAGAAATGTTAGGTACAACTGAAAATGGGACTACTGCATTTAGTA
TAGTTTCTGTGGCAAATGAATTAGGGTTCGATACTGAAGCTATTTATGCAGATATTTCTTTATTTGACATAGAGGATATA
AAATTTCCATTTATTGTACATATAAATAAGAATAATAAATTTTATCATTACTATGTTATTATTGGCAGTGATAAAAAATA
TATTTATATAGCTGATCCTGATCCTCTGATAAAATTATCTAAACTAACTAAAGAACAGTTTCTTGCAGAATGGAGAGGGA
TAACTATATTATTAAAACCAAACCATGAGTACAAAATTAAAAGAAAGAAGACAAGTTTTCCTTCTTTATTTACTTTACTG
TTTAATCAAAAGAAATTAATTTTTTTAATTATATTATTAACTTTAGCAGTAAACTTTATCAATATAATTGGTTCATACTA
TTTAAAGAGAGTAATTGATTCTTATATTCCTAAAGGGGAGCTGGATTTTCTTAATCTAATGTCAATAAGCCTAATTGTTA
TTTATCTTATGCAACAGTTTTTGTATTTGGTCAAGGGTATTGATAACAGTTCTAAGTCAAATACTTTCAAAAAAATATAA

Domains

Predicted by InterProScan.

Peptidase C39 family (Peptidase_C39)

(7-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

53.604

92.887

0.498
  comA Streptococcus mitis NCTC 12261

52.252

92.887

0.485
  comA Streptococcus mitis SK321

52.252

92.887

0.485
  comA Streptococcus pneumoniae TIGR4

51.802

92.887

0.481
  comA Streptococcus pneumoniae D39

51.802

92.887

0.481
  comA Streptococcus pneumoniae Rx1

51.802

92.887

0.481
  comA Streptococcus pneumoniae R6

51.802

92.887

0.481
  comA/nlmT Streptococcus mutans UA159

44.248

94.561

0.418