Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3U69_RS08035 Genome accession   NZ_CP120083
Coordinates   1648418..1649284 (-) Length   288 a.a.
NCBI ID   WP_011275951.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain Dog117_H     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1630618..1678946 1648418..1649284 within 0


Gene organization within MGE regions


Location: 1630618..1678946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U69_RS07965 (P3U69_07965) - 1632478..1634178 (-) 1701 WP_011275937.1 proline--tRNA ligase -
  P3U69_RS07970 (P3U69_07970) rseP 1634197..1635483 (-) 1287 WP_011275938.1 RIP metalloprotease RseP -
  P3U69_RS07975 (P3U69_07975) - 1635694..1636476 (-) 783 WP_011275939.1 phosphatidate cytidylyltransferase -
  P3U69_RS07980 (P3U69_07980) - 1636480..1637250 (-) 771 WP_011275940.1 isoprenyl transferase -
  P3U69_RS07985 (P3U69_07985) frr 1637476..1638030 (-) 555 WP_011275941.1 ribosome recycling factor -
  P3U69_RS07990 (P3U69_07990) pyrH 1638048..1638770 (-) 723 WP_011275942.1 UMP kinase -
  P3U69_RS07995 (P3U69_07995) tsf 1638907..1639785 (-) 879 WP_011275943.1 translation elongation factor Ts -
  P3U69_RS08000 (P3U69_08000) rpsB 1639943..1640731 (-) 789 WP_011275944.1 30S ribosomal protein S2 -
  P3U69_RS08005 (P3U69_08005) codY 1640998..1641771 (-) 774 WP_011275945.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  P3U69_RS08010 (P3U69_08010) hslU 1641793..1643196 (-) 1404 WP_011275946.1 ATP-dependent protease ATPase subunit HslU -
  P3U69_RS08015 (P3U69_08015) hslV 1643255..1643800 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  P3U69_RS08020 (P3U69_08020) xerC 1643801..1644664 (-) 864 WP_210423028.1 tyrosine recombinase XerC -
  P3U69_RS08025 (P3U69_08025) trmFO 1644839..1646146 (-) 1308 WP_011275949.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3U69_RS08030 (P3U69_08030) topA 1646170..1648239 (-) 2070 WP_011275950.1 type I DNA topoisomerase -
  P3U69_RS08035 (P3U69_08035) dprA 1648418..1649284 (-) 867 WP_011275951.1 DNA-processing protein DprA Machinery gene
  P3U69_RS08040 (P3U69_08040) - 1649503..1650732 (-) 1230 WP_011275952.1 aminoacyltransferase -
  P3U69_RS08045 (P3U69_08045) sucD 1651032..1651937 (-) 906 WP_011275953.1 succinate--CoA ligase subunit alpha -
  P3U69_RS08050 (P3U69_08050) sucC 1651959..1653125 (-) 1167 WP_011275954.1 ADP-forming succinate--CoA ligase subunit beta -
  P3U69_RS08055 (P3U69_08055) - 1653237..1654004 (-) 768 WP_011275955.1 ribonuclease HII -
  P3U69_RS08060 (P3U69_08060) ylqF 1653988..1654872 (-) 885 WP_011275956.1 ribosome biogenesis GTPase YlqF -
  P3U69_RS08065 (P3U69_08065) - 1655110..1657704 (+) 2595 WP_011275957.1 YfhO family protein -
  P3U69_RS08070 (P3U69_08070) - 1657706..1660315 (+) 2610 WP_011275958.1 YfhO family protein -
  P3U69_RS08075 (P3U69_08075) rplS 1660472..1660822 (-) 351 WP_011275959.1 50S ribosomal protein L19 -
  P3U69_RS08080 (P3U69_08080) trmD 1660927..1661664 (-) 738 WP_011275960.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  P3U69_RS08085 (P3U69_08085) rimM 1661664..1662167 (-) 504 WP_011275961.1 ribosome maturation factor RimM -
  P3U69_RS08090 (P3U69_08090) rpsP 1662286..1662561 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  P3U69_RS08095 (P3U69_08095) ffh 1662808..1664178 (-) 1371 WP_037557994.1 signal recognition particle protein -
  P3U69_RS08100 (P3U69_08100) - 1664204..1664536 (-) 333 WP_037537868.1 putative DNA-binding protein -
  P3U69_RS08105 (P3U69_08105) ftsY 1664523..1665746 (-) 1224 WP_037557992.1 signal recognition particle-docking protein FtsY -
  P3U69_RS08110 (P3U69_08110) smc 1665743..1669312 (-) 3570 WP_053022638.1 chromosome segregation protein SMC -
  P3U69_RS08115 (P3U69_08115) rnc 1669397..1670149 (-) 753 WP_231039618.1 ribonuclease III -
  P3U69_RS08120 (P3U69_08120) - 1670220..1670453 (-) 234 WP_001830184.1 acyl carrier protein -
  P3U69_RS08125 (P3U69_08125) fabG 1670566..1671303 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  P3U69_RS08130 (P3U69_08130) fabD 1671293..1672222 (-) 930 WP_037557985.1 ACP S-malonyltransferase -
  P3U69_RS08135 (P3U69_08135) plsX 1672215..1673201 (-) 987 WP_053023041.1 phosphate acyltransferase PlsX -
  P3U69_RS08140 (P3U69_08140) fapR 1673203..1673763 (-) 561 WP_011275971.1 transcription factor FapR -
  P3U69_RS08145 (P3U69_08145) recG 1673899..1675950 (-) 2052 WP_016930693.1 ATP-dependent DNA helicase RecG -
  P3U69_RS08150 (P3U69_08150) - 1676105..1676905 (-) 801 WP_011275973.1 thermonuclease family protein -
  P3U69_RS08155 (P3U69_08155) fakA 1677091..1678749 (-) 1659 WP_037557983.1 fatty acid kinase catalytic subunit FakA -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33058.12 Da        Isoelectric Point: 9.4081

>NTDB_id=802725 P3U69_RS08035 WP_011275951.1 1648418..1649284(-) (dprA) [Staphylococcus haemolyticus strain Dog117_H]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPEFFKFSYTDQIDSIKNWDKLFHKGDFIDRYNHLNDKEILSFLNQHKISFVT
PFNANYPRLLKEIYDYPFVLFYQGDPQLLTSPNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEVKGLVISEYPPFTSVRRYHFPQRNRLISGLSQGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=802725 P3U69_RS08035 WP_011275951.1 1648418..1649284(-) (dprA) [Staphylococcus haemolyticus strain Dog117_H]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGTTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGAATTTTTTAAATTCTCTTATACTGATCAAATAGATTCAATAAAAAATTGGGACAAGTTATTTCATAAAGGTG
ATTTTATTGATAGATATAATCATTTAAATGATAAAGAAATTTTGTCATTTTTGAATCAACACAAGATAAGTTTTGTAACA
CCGTTTAACGCTAATTATCCTCGACTATTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCA
ATTATTAACATCCCCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAGTACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACCATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATTGCACATCATTTT
GCTATAGAGTATCAATTACCTACTATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGTAAAAGGTTTAGTTATTAGTGAATATCCGCCATTCACTAGTGTTAGGCGATATCACTTTCCGC
AACGCAATCGTTTGATAAGCGGTCTTTCACAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACTAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATTCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

49.825

98.958

0.493
  dprA Staphylococcus aureus N315

49.825

98.958

0.493
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

36.395

100

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

36.395

100

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

36.395

100

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

36.395

100

0.372
  dprA Streptococcus mutans UA159

37.544

98.958

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

35.374

100

0.361
  dprA Legionella pneumophila strain ERS1305867

42.105

85.764

0.361