Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P2C01_RS04905 Genome accession   NZ_CP119521
Coordinates   1050182..1050478 (+) Length   98 a.a.
NCBI ID   WP_004726497.1    Uniprot ID   A0A0Q2UY85
Organism   Vibrio furnissii strain C1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1045182..1055478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS04890 lon 1045212..1047563 (+) 2352 WP_004726504.1 endopeptidase La -
  P2C01_RS04895 - 1047758..1048030 (+) 273 WP_004726502.1 HU family DNA-binding protein -
  P2C01_RS04900 ppiD 1048184..1050043 (+) 1860 WP_055466333.1 peptidylprolyl isomerase -
  P2C01_RS04905 comEA 1050182..1050478 (+) 297 WP_004726497.1 ComEA family DNA-binding protein Machinery gene
  P2C01_RS04910 cmk 1050660..1051340 (+) 681 WP_038151335.1 (d)CMP kinase -
  P2C01_RS04915 rpsA 1051445..1053115 (+) 1671 WP_004726493.1 30S ribosomal protein S1 -
  P2C01_RS04920 ihfB 1053346..1053630 (+) 285 WP_004726491.1 integration host factor subunit beta -
  P2C01_RS04925 - 1053769..1054053 (+) 285 WP_004726490.1 LapA family protein -
  P2C01_RS04930 lapB 1054066..1055235 (+) 1170 WP_004726488.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10717.40 Da        Isoelectric Point: 5.0349

>NTDB_id=799450 P2C01_RS04905 WP_004726497.1 1050182..1050478(+) (comEA) [Vibrio furnissii strain C1]
MKFNTYWLAFLLAICWPVTHAMAADSAQVSDEIEITVNINTAPAEELATLLKGIGLKKAQAIVEYREANGAFQSKQELTQ
VKGIGPSIVAKNDDRILL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=799450 P2C01_RS04905 WP_004726497.1 1050182..1050478(+) (comEA) [Vibrio furnissii strain C1]
ATGAAGTTCAACACATATTGGCTGGCCTTTCTGCTGGCGATTTGCTGGCCCGTCACGCATGCGATGGCCGCTGATAGCGC
GCAGGTGAGTGATGAAATTGAAATCACGGTCAACATCAACACCGCCCCAGCCGAAGAGTTGGCAACCTTACTCAAAGGCA
TTGGATTGAAAAAAGCACAGGCCATTGTCGAGTACCGTGAAGCGAATGGTGCTTTTCAATCCAAACAGGAATTGACTCAG
GTAAAAGGTATCGGCCCTTCGATAGTGGCCAAAAATGACGACCGCATTCTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2UY85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

57.282

100

0.602
  comEA Vibrio cholerae strain A1552

57.282

100

0.602
  comEA Vibrio parahaemolyticus RIMD 2210633

54.255

95.918

0.52
  comEA Vibrio campbellii strain DS40M4

52.688

94.898

0.5
  comEA/comE1 Glaesserella parasuis strain SC1401

48.78

83.673

0.408
  comE1/comEA Haemophilus influenzae Rd KW20

50

73.469

0.367