Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RDV54_RS04950 Genome accession   NZ_CP133471
Coordinates   1041601..1043823 (-) Length   740 a.a.
NCBI ID   WP_169829636.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1036601..1048823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS04935 (RDV54_04935) - 1037566..1038789 (-) 1224 WP_000286582.1 aminoacyltransferase -
  RDV54_RS04940 (RDV54_04940) - 1038923..1039702 (-) 780 WP_000290006.1 alpha/beta hydrolase -
  RDV54_RS04945 (RDV54_04945) - 1039769..1041430 (-) 1662 WP_000065614.1 ribonuclease J -
  RDV54_RS04950 (RDV54_04950) recJ 1041601..1043823 (-) 2223 WP_169829636.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RDV54_RS04955 (RDV54_04955) - 1044000..1044758 (+) 759 WP_001229574.1 amino acid ABC transporter ATP-binding protein -
  RDV54_RS04960 (RDV54_04960) - 1044769..1045563 (+) 795 WP_000726197.1 transporter substrate-binding domain-containing protein -
  RDV54_RS04965 (RDV54_04965) - 1045576..1046253 (+) 678 WP_000131137.1 amino acid ABC transporter permease -
  RDV54_RS04970 (RDV54_04970) - 1046263..1046922 (+) 660 WP_000443858.1 amino acid ABC transporter permease -
  RDV54_RS04975 (RDV54_04975) - 1047172..1048362 (+) 1191 WP_000835808.1 ferric reductase-like transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82560.10 Da        Isoelectric Point: 4.3484

>NTDB_id=799450 RDV54_RS04950 WP_169829636.1 1041601..1043823(-) (recJ) [Streptococcus mitis strain LMG 14557]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIDLAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAAGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
VFYIKDFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFAGEFPNLVNSEAIVVKTIPEDITQLKTIFQEQNFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQIFEELGFVVIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
QEMMALGTVQAIYDFLMEKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=799450 RDV54_RS04950 WP_169829636.1 1041601..1043823(-) (recJ) [Streptococcus mitis strain LMG 14557]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCCGCAGGTAGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCTGAGGTGGCTCGGTTATTATTTGAGAGGGGGATTCAGGACCAAGAAAGTCTGAAGAAGTTTTTAGAGCCTT
CTTTAGAGGACTTGCATGACCCTTATCTACTCCATGATATGGACAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAAATATTCTCGTCTATGGAGACTACGATGCGGATGGTATGACTTCGGCTTCTATTGTGAAGGAAAGTTTGGAACA
GCTTGGTGCCGAGTGCCGGGTTTATCTGCCCAATCGTTTTACCGACGGTTATGGACCTAATGCCAGTGTTTACAAATACT
TTATCGAGCAAGAAGGAATTTCCTTGATTGTGACGGTGGATAATGGGGTTGCGGGTCATGAGGCCATTGACCTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACTGACCACCATTCCATGCCTGAAACCTTACCAGATGCCTATGCTATTGTCCATCC
TGAACATCCGGATGCGAACTATCCTTTCAAATATTTGGCTGGTTGTGGAGTTGCTTTCAAGCTGGCTTGTGCCCTTTTAG
AAGAAGTACAAGTGGAATTGCTTGATTTGGTCGCTATTGGTACCATTGCTGATATGGTGAGTTTGACGGATGAAAACCGT
ATCTTGGTTCAGTATGGTCTGGAGATGTTGGGACATACCCAGCGCATTGGTCTGCAAGAAATGCTGGACATGGCTGGGAT
TGCTGCCAACGAAGTAACAGAAGAAACGGTTGGTTTCCAGATTGCCCCTCGTTTGAATGCCTTGGGCCGTTTGGATGATC
CCAATCCTGCCATTGATTTGCTGACTGGCTTTGATGATGAGGAAGCACATGAGATTGCTCTCATGATTCATCAGAAAAAC
GAAGAGCGCAAGGAAATCGTCCAGTCTATCTATGAAGAAGCTAAGACCATGGTGGACCCTGAGAAGAAGGTCCAAGTCTT
GGCTAAGGAAGGCTGGAATCCTGGGGTTCTGGGTATCGTCGCTGGTCGTTTGTTGGAAGAACTAGGGCAGACAGTCATTG
TTCTCAATATAGAGGACGGTCGTGCCAAGGGTAGTGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCCCTAGATCCC
CATCGCGACCTCTTTATCGCATTTGGCGGTCATGCTGGTGCAGCAGGAATGACGCTGGAAGTTGAGAAACTCTCAGATTT
ATCTCAGGTTTTGGAAGATTATGTCCGTGAAAAAGGAGCGGATGCTGCTGGCAAGAACAAGTTAAATCTAGATGAAGAAT
TGGATTTGGAAGCACTTAGCTTGGAAACAGTCAAAAGTTTTGAACGTTTGGCACCTTTTGGCATGGACAATCAGAAACCT
GTCTTTTATATAAAGGATTTTCAGGTCGAAAGTGCCCGTACCATGGGGGCAGGCAATGCCCATCTCAAACTGAAAATTTC
TAAGGGTGAGGCTAGTTTTGAAGTGGTGGCCTTTGGCCAAGGCAGATGGGCGACAGAGTTTTCTCAAACCAAGAATCTAG
AGCTGGCAGTCAAATTGTCTGTCAACCAATGGAATGGGCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAG
GGTGTTCAACTTTTTAACATCCGTGGGAAGAATGCAGTTTTGCCAGAAGGGGTTCCAGTCTTGGATTTTGCTGGAGAATT
TCCGAATCTAGTAAATAGTGAAGCTATTGTCGTGAAAACCATTCCTGAGGATATTACTCAGCTGAAGACCATTTTTCAGG
AACAAAATTTCTCTGCTGTCTATTTCAAAAATGATATTGACAAGGCCTACTATCTGACAGGGTATGGGACTAGAGAGCAG
TTTGCCAAATTGTACAAGACCATCTACCAGTTTCCAGAGTTTGATATTCGCTACAAGCTGAAAGATTTGGCAGCTTATCT
TAATATTCAGCAAATCTTGCTGGTCAAAATGATTCAAATATTTGAAGAATTAGGTTTTGTGGTAATCAAAGATGGGGTTA
TGACAGTCAATAAAGAAGCGCCAAAGCGGGAAATCGGAGAAAGTCAGATTTACCAAAATCTCAAACAAACCGTCAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGCAATTTATGACTTTTTAATGGAAAAAGAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-732)

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

97.432

100

0.974
  recJ Bacillus subtilis subsp. subtilis str. 168

36.658

100

0.382