Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDV53_RS05140 Genome accession   NZ_CP133470
Coordinates   1036967..1037434 (-) Length   155 a.a.
NCBI ID   WP_005695201.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1031967..1042434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS05125 (RDV53_05125) - 1031987..1034026 (-) 2040 WP_005695196.1 hypothetical protein -
  RDV53_RS05130 (RDV53_05130) - 1034029..1035549 (-) 1521 WP_005695198.1 site-specific integrase -
  RDV53_RS05135 (RDV53_05135) - 1035536..1036822 (-) 1287 WP_005695200.1 site-specific integrase -
  RDV53_RS05140 (RDV53_05140) ssb 1036967..1037434 (-) 468 WP_005695201.1 single-stranded DNA-binding protein Machinery gene
  RDV53_RS05145 (RDV53_05145) uvrA 1037597..1040428 (+) 2832 WP_005695202.1 excinuclease ABC subunit UvrA Machinery gene
  RDV53_RS05150 (RDV53_05150) - 1040543..1041652 (+) 1110 WP_005695203.1 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17247.17 Da        Isoelectric Point: 5.2630

>NTDB_id=799371 RDV53_RS05140 WP_005695201.1 1036967..1037434(-) (ssb) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVLYRRLAEIAGQYLRKGSQVYVEG
RLKTRKWQDNNGQDRYTTEIQGDNLQMLGGRNQEMGGFAPAQSAPQPSYQSRPAQSAPAPQAEPPMDAFDDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=799371 RDV53_RS05140 WP_005695201.1 1036967..1037434(-) (ssb) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGGCAGGTATTAATAAAGTAATCATCGTGGGTAATTTAGGTAATGATCCTGAAATCCGCACGATGCCAAATGGCGAAGC
GGTAGCAAATATCAGCGTAGCAACAAGTGAAAGCTGGACGGATAAAAACACGGGTGAACGTCGTGAAGTCACCGAATGGC
ACCGTATCGTGTTATATCGTCGTTTAGCGGAAATTGCGGGTCAATACTTACGCAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAAAACCCGCAAATGGCAAGATAACAACGGCCAAGATCGTTACACCACTGAAATTCAAGGTGATAACTTACAAAT
GTTAGGTGGTCGCAATCAAGAGATGGGCGGCTTTGCACCAGCACAATCTGCACCACAACCAAGCTATCAATCTCGTCCAG
CACAATCTGCGCCAGCACCACAAGCGGAGCCTCCAATGGATGCGTTTGATGACAACATTCCGTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65.556

100

0.761
  ssb Vibrio cholerae strain A1552

58.857

100

0.665
  ssb Neisseria meningitidis MC58

50.867

100

0.568
  ssb Neisseria gonorrhoeae MS11

48.555

100

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

34.302

100

0.381