Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PYU99_RS03925 Genome accession   NZ_CP118993
Coordinates   814421..814741 (-) Length   106 a.a.
NCBI ID   WP_270824950.1    Uniprot ID   -
Organism   Aeromonas media strain K521     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 809421..819741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYU99_RS03905 (PYU99_03905) - 809784..810458 (-) 675 WP_042649095.1 DnaT-like ssDNA-binding domain-containing protein -
  PYU99_RS03910 (PYU99_03910) - 810772..811743 (+) 972 WP_270824952.1 response regulator -
  PYU99_RS03915 (PYU99_03915) - 811805..813202 (-) 1398 WP_270824951.1 peptide MFS transporter -
  PYU99_RS03920 (PYU99_03920) galU 813416..814327 (-) 912 WP_041205077.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PYU99_RS03925 (PYU99_03925) comEA 814421..814741 (-) 321 WP_270824950.1 ComEA family DNA-binding protein Machinery gene
  PYU99_RS03930 (PYU99_03930) cysQ 814907..815662 (+) 756 WP_270824949.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PYU99_RS03935 (PYU99_03935) - 815754..816050 (-) 297 WP_005327955.1 YciI family protein -
  PYU99_RS03940 (PYU99_03940) - 816074..816625 (-) 552 WP_005327953.1 septation protein A -
  PYU99_RS03945 (PYU99_03945) - 816766..818271 (-) 1506 WP_270824947.1 aminotransferase class V-fold PLP-dependent enzyme -
  PYU99_RS03950 (PYU99_03950) trhA 818503..819153 (+) 651 WP_270824946.1 PAQR family membrane homeostasis protein TrhA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11161.09 Da        Isoelectric Point: 9.6856

>NTDB_id=797197 PYU99_RS03925 WP_270824950.1 814421..814741(-) (comEA) [Aeromonas media strain K521]
MNRKTLIAALLLGCLPLLSQPLLAADKPAAKPTTMVTSAKEVGKINLNTASADELASLKGIGEKKAQAIVDYREKQGKFT
SVDQLAEVSGIGPATLDANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=797197 PYU99_RS03925 WP_270824950.1 814421..814741(-) (comEA) [Aeromonas media strain K521]
ATGAACCGAAAGACTCTGATTGCCGCCCTGTTGCTGGGTTGCCTGCCCCTGCTGAGCCAGCCCCTGCTGGCCGCCGACAA
GCCAGCCGCCAAACCCACCACCATGGTCACCAGCGCCAAGGAGGTGGGCAAGATCAACCTCAATACCGCCAGTGCCGATG
AACTCGCGTCGCTGAAAGGCATCGGCGAGAAAAAAGCGCAAGCCATCGTCGACTACCGCGAGAAACAGGGCAAGTTCACC
TCGGTGGATCAGCTGGCGGAGGTGAGTGGCATAGGGCCCGCCACCCTGGATGCGAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

52.336

100

0.528
  comEA Vibrio cholerae C6706

52.336

100

0.528
  comE1/comEA Haemophilus influenzae Rd KW20

45.045

100

0.472
  comEA Legionella pneumophila strain ERS1305867

45.918

92.453

0.425
  comEA Legionella pneumophila str. Paris

45.918

92.453

0.425
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377