Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PYW44_RS06540 Genome accession   NZ_CP118982
Coordinates   1340817..1341134 (+) Length   105 a.a.
NCBI ID   WP_031265988.1    Uniprot ID   -
Organism   Staphylococcus equorum strain DSM 20674     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335817..1346134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW44_RS06510 - 1335955..1336155 (+) 201 WP_002512453.1 YqgQ family protein -
  PYW44_RS06515 - 1336745..1337731 (+) 987 WP_021339255.1 glucokinase -
  PYW44_RS06520 - 1337731..1338054 (+) 324 WP_021339254.1 MTH1187 family thiamine-binding protein -
  PYW44_RS06525 - 1338056..1338679 (+) 624 WP_002507502.1 MBL fold metallo-hydrolase -
  PYW44_RS06530 comGA 1338779..1339753 (+) 975 WP_021339253.1 competence type IV pilus ATPase ComGA Machinery gene
  PYW44_RS06535 comGB 1339737..1340792 (+) 1056 WP_275113467.1 competence type IV pilus assembly protein ComGB -
  PYW44_RS06540 comGC 1340817..1341134 (+) 318 WP_031265988.1 competence type IV pilus major pilin ComGC Machinery gene
  PYW44_RS06545 comGD 1341112..1341558 (+) 447 WP_064782888.1 competence type IV pilus minor pilin ComGD -
  PYW44_RS06550 comGF 1341545..1342258 (+) 714 WP_021339249.1 competence type IV pilus minor pilin ComGF -
  PYW44_RS06555 - 1342465..1342938 (+) 474 WP_236593604.1 shikimate kinase -
  PYW44_RS06560 gcvT 1343117..1344208 (+) 1092 WP_021339246.1 glycine cleavage system aminomethyltransferase GcvT -
  PYW44_RS06565 gcvPA 1344226..1345578 (+) 1353 WP_021339245.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11682.76 Da        Isoelectric Point: 9.0676

>NTDB_id=797149 PYW44_RS06540 WP_031265988.1 1340817..1341134(+) (comGC) [Staphylococcus equorum strain DSM 20674]
MKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELVSEG
YINESQKRCKTGSTISINNGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=797149 PYW44_RS06540 WP_031265988.1 1340817..1341134(+) (comGC) [Staphylococcus equorum strain DSM 20674]
TTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTCAAATAAAAA
TGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTCTCAGAAGGA
TATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGCTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

69.608

97.143

0.676
  comGC Staphylococcus aureus N315

69.608

97.143

0.676
  comYC Streptococcus gordonii str. Challis substr. CH1

44.444

100

0.457
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comGC/cglC Streptococcus mitis NCTC 12261

41.489

89.524

0.371
  comYC Streptococcus mutans UA140

44.186

81.905

0.362
  comYC Streptococcus mutans UA159

44.186

81.905

0.362